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Tax1bp3 Tax1 (human T cell leukemia virus type I) binding protein 3 [ Mus musculus (house mouse) ]

Gene ID: 76281, updated on 23-Jun-2021

Summary

Official Symbol
Tax1bp3provided by MGI
Official Full Name
Tax1 (human T cell leukemia virus type I) binding protein 3provided by MGI
Primary source
MGI:MGI:1923531
See related
Ensembl:ENSMUSG00000040158
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TIP; TIP-1; 1300011C24Rik
Expression
Ubiquitous expression in large intestine adult (RPKM 94.1), colon adult (RPKM 65.9) and 26 other tissues See more
Orthologs
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Genomic context

See Tax1bp3 in Genome Data Viewer
Location:
11; 11 B4
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (73067909..73072872)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (73177083..73182046)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (72990585..72995548)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 5 Neighboring gene ER membrane protein complex subunit 6 Neighboring gene cystinosis, nephropathic Neighboring gene sedoheptulokinase

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables beta-catenin binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein C-terminus binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in fibrillar center ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tax1-binding protein 3
Names
tax interaction protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029564.2NP_083840.1  tax1-binding protein 3

    See identical proteins and their annotated locations for NP_083840.1

    Status: PROVISIONAL

    Source sequence(s)
    AK004963
    Consensus CDS
    CCDS25000.1
    UniProtKB/Swiss-Prot
    Q9DBG9
    Related
    ENSMUSP00000047410.6, ENSMUST00000040687.12
    Conserved Domains (1) summary
    cd00992
    Location:13109
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    73067909..73072872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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