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cmpR HTH-type transcriptional activator CmpR [ Synechococcus elongatus PCC 7942 = FACHB-805 ]

Gene ID: 76400051, updated on 11-Apr-2024

Summary

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Gene symbol
cmpR
Gene description
HTH-type transcriptional activator CmpR
Locus tag
SYNPCC7942_RS06700
Gene type
protein coding
Organism
Synechococcus elongatus PCC 7942 = FACHB-805 (strain: PCC 7942)
Lineage
Bacteria; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae; Synechococcus
Old locus tag
Synpcc7942_1310
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Genomic context

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Sequence:
NC_007604.1 (1337076..1338047)

NC_007604.1Genomic Context describing neighboring genes Neighboring gene ABC transporter permease Neighboring gene methylenetetrahydrofolate reductase Neighboring gene tryptophan--tRNA ligase Neighboring gene IS630 transposase-related protein Neighboring gene ABC transporter ATP-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007604.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of the effector-binding domain of Synechococcus elongatus CmpR in complex with ribulose 1,5-bisphosphate. Mahounga DM, et al. Acta Crystallogr F Struct Biol Commun, 2018 Aug 1. PMID 30084400, Free PMC Article
  2. Mechanism of low CO2-induced activation of the cmp bicarbonate transporter operon by a LysR family protein in the cyanobacterium Synechococcus elongatus strain PCC 7942. Nishimura T, et al. Mol Microbiol, 2008 Apr. PMID 18312274
  3. Involvement of a CbbR homolog in low CO2-induced activation of the bicarbonate transporter operon in cyanobacteria. Omata T, et al. J Bacteriol, 2001 Mar. PMID 11222586, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
HTH-type transcriptional activator CmpR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007604.1 Reference assembly

    Range
    1337076..1338047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011242557.1 HTH-type transcriptional activator CmpR [Synechococcus elongatus]

    See identical proteins and their annotated locations for WP_011242557.1

    UniProtKB/Swiss-Prot
    Q5N5I5, Q9F1R2
    Conserved Domains (3) summary
    cd08419
    Location:95 → 291
    PBP2_CbbR_RubisCO_like; The C-terminal substrate binding of LysR-type transcriptional regulator (CbbR) of RubisCO operon, which is involved in the carbon dioxide fixation, contains the type 2 periplasmic binding fold
    COG0583
    Location:4 → 301
    LysR; DNA-binding transcriptional regulator, LysR family [Transcription]
    pfam00126
    Location:6 → 65
    HTH_1; Bacterial regulatory helix-turn-helix protein, lysR family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9F1R2.1