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1700113H08Rik RIKEN cDNA 1700113H08 gene [ Mus musculus (house mouse) ]

Gene ID: 76640, updated on 5-Mar-2024

Summary

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Official Symbol
1700113H08Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700113H08 geneprovided by MGI
Primary source
MGI:MGI:1923890
See related
Ensembl:ENSMUSG00000047129 AllianceGenome:MGI:1923890
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C12orf42 (chromosome 12 open reading frame 42). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 51.8) See more
Orthologs
human all
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Genomic context

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Location:
10 C1; 10 43.5 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (86893910..87066461)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (87058046..87230599)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene stabilin 2 Neighboring gene ADNP homeobox 2 pseudogene Neighboring gene predicted gene 16271 Neighboring gene predicted gene, 53582 Neighboring gene STARR-seq mESC enhancer starr_27476 Neighboring gene STARR-positive B cell enhancer mm9_chr10:86566085-86566385 Neighboring gene STARR-positive B cell enhancer ABC_E2957 Neighboring gene STARR-seq mESC enhancer starr_27477 Neighboring gene RIKEN cDNA 4930555G07 gene Neighboring gene STARR-seq mESC enhancer starr_27479 Neighboring gene STARR-seq mESC enhancer starr_27480 Neighboring gene predicted gene, 23191

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C12orf42 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029685.1 → NP_083961.1  uncharacterized protein C12orf42 homolog

    Status: VALIDATED

    Source sequence(s)
    AC025501, AC123074
    Consensus CDS
    CCDS48660.1
    UniProtKB/TrEMBL
    E9Q9Q5
    Related
    ENSMUSP00000130852.2, ENSMUST00000169849.3
    Conserved Domains (1) summary
    pfam15380
    Location:71 → 324
    DUF4607; Domain of unknown function (DUF4607)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    86893910..87066461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036156082.1 → XP_036011975.1  uncharacterized protein C12orf42 homolog isoform X2

    Conserved Domains (1) summary
    pfam15380
    Location:128 → 270
    DUF4607; Domain of unknown function (DUF4607)

  2. XM_036156084.1 → XP_036011977.1  uncharacterized protein C12orf42 homolog isoform X4

    UniProtKB/TrEMBL
    A0A087WR28
    Related
    ENSMUSP00000140447.2, ENSMUST00000189456.7
    Conserved Domains (1) summary
    pfam15380
    Location:62 → 204
    DUF4607; Domain of unknown function (DUF4607)

  3. XM_036156081.1 → XP_036011974.1  uncharacterized protein C12orf42 homolog isoform X1

    Conserved Domains (1) summary
    pfam15380
    Location:25 → 278
    DUF4607; Domain of unknown function (DUF4607)

  4. XM_036156083.1 → XP_036011976.1  uncharacterized protein C12orf42 homolog isoform X3

    Conserved Domains (1) summary
    pfam15380
    Location:25 → 242
    DUF4607; Domain of unknown function (DUF4607)

  5. XM_036156085.1 → XP_036011978.1  uncharacterized protein C12orf42 homolog isoform X5

    UniProtKB/TrEMBL
    Q9D9A9
    Related
    ENSMUSP00000141184.2, ENSMUST00000189775.2
    Conserved Domains (1) summary
    pfam15380
    Location:17 → 158
    DUF4607; Domain of unknown function (DUF4607)
Nucleotide Protein Strain
Heading Accession and Version

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