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Wdyhv1 WDYHV motif containing 1 [ Mus musculus (house mouse) ]

Gene ID: 76773, updated on 23-Jun-2021

Summary

Official Symbol
Wdyhv1provided by MGI
Official Full Name
WDYHV motif containing 1provided by MGI
Primary source
MGI:MGI:1924023
See related
Ensembl:ENSMUSG00000022359
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ntaq1; AU014961; AW550036; 2410187C16Rik
Expression
Ubiquitous expression in thymus adult (RPKM 6.7), limb E14.5 (RPKM 6.6) and 28 other tissues See more
Orthologs
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Genomic context

See Wdyhv1 in Genome Data Viewer
Location:
15 D1; 15
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (58004730..58022050)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (58141335..58158654)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (57972991..57990209)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene zinc fingers and homeoboxes 1 Neighboring gene ATPase family, AAA domain containing 2 Neighboring gene small nuclear ribonucleoprotein Sm D2-like Neighboring gene predicted gene, 23475 Neighboring gene predicted gene, 22488 Neighboring gene predicted gene, 36112 Neighboring gene F-box protein 32 Neighboring gene predicted gene, 36193

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in cellular protein modification process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cellular protein modification process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein catabolic process NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein N-terminal glutamine amidohydrolase
Names
N-terminal Gln amidase
WDYHV motif-containing protein 1
nt(Q)-amidase
protein NH2-terminal glutamine deamidase
NP_001313528.1
NP_001313531.1
NP_084010.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001326599.1NP_001313528.1  protein N-terminal glutamine amidohydrolase isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 3' terminal exon, resulting in a novel 3' coding region and stop codon, compared to variant 1. It encodes isoform 2, which contains a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AC113292, AK010831, FO710768
    Consensus CDS
    CCDS88766.1
    UniProtKB/TrEMBL
    Q9CWD7
    Related
    ENSMUSP00000154671.2, ENSMUST00000227142.2
    Conserved Domains (1) summary
    pfam09764
    Location:25171
    Nt_Gln_amidase; N-terminal glutamine amidase
  2. NM_001326602.1NP_001313531.1  protein N-terminal glutamine amidohydrolase isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an alternate splice site and lacks two alternate exons in the 3' region, resulting in a frameshift compared to variant 1. It encodes isoform 3, which is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AI843652, AK167510, FO710768
    Consensus CDS
    CCDS88767.1
    Related
    ENSMUSP00000154254.2, ENSMUST00000226955.2
  3. NM_029734.2NP_084010.1  protein N-terminal glutamine amidohydrolase isoform 1

    See identical proteins and their annotated locations for NP_084010.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
    Source sequence(s)
    AI843652, AK150578, FO710768
    Consensus CDS
    CCDS27490.1
    UniProtKB/Swiss-Prot
    Q80WB5
    Related
    ENSMUSP00000064622.8, ENSMUST00000067563.9
    Conserved Domains (1) summary
    pfam09764
    Location:25194
    Nt_Gln_amidase; N-terminal glutamine amidase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    58004730..58022050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001781578.2 RNA Sequence

  2. XR_003951445.2 RNA Sequence

  3. XR_001781577.1 RNA Sequence

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