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Sdccag8 serologically defined colon cancer antigen 8 [ Mus musculus (house mouse) ]

Gene ID: 76816, updated on 16-Oct-2021

Summary

Official Symbol
Sdccag8provided by MGI
Official Full Name
serologically defined colon cancer antigen 8provided by MGI
Primary source
MGI:MGI:1924066
See related
Ensembl:ENSMUSG00000026504
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cccap; 2700048G21Rik; 5730470G24Rik
Expression
Ubiquitous expression in frontal lobe adult (RPKM 6.1), CNS E18 (RPKM 6.1) and 27 other tissues See more
Orthologs
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Genomic context

See Sdccag8 in Genome Data Viewer
Location:
1; 1 H4
Exon count:
22
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (176642226..176848004)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (176814660..177020438)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (178744943..178950563)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26104 Neighboring gene centrosomal protein 170 Neighboring gene microRNA 350 Neighboring gene high mobility group AT-hook 2, pseudogene 1 Neighboring gene predicted gene, 38158 Neighboring gene predicted gene 15423 Neighboring gene thymoma viral proto-oncogene 3 Neighboring gene predicted gene, 36904 Neighboring gene zinc finger and BTB domain containing 18

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
 
involved_in centrosome cycle IEA
Inferred from Electronic Annotation
more info
 
involved_in establishment of cell polarity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in establishment of cell polarity IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in microtubule organizing center organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within microtubule organizing center organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in neuron migration IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within neuron migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of cilium assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in tube formation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in tube formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cell-cell junction ISO
Inferred from Sequence Orthology
more info
 
located_in centriolar satellite IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in centriole IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in centriole IDA
Inferred from Direct Assay
more info
PubMed 
located_in centriole ISO
Inferred from Sequence Orthology
more info
 
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in centrosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in centrosome ISO
Inferred from Sequence Orthology
more info
 
located_in ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in photoreceptor cell cilium IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
serologically defined colon cancer antigen 8 homolog
Names
centrosomal colon cancer autoantigen protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357390.1NP_001344319.1  serologically defined colon cancer antigen 8 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC144905, AC163009
    Conserved Domains (1) summary
    pfam15964
    Location:6719
    CCCAP; Centrosomal colon cancer autoantigen protein family
  2. NM_029756.3NP_084032.1  serologically defined colon cancer antigen 8 homolog isoform 1

    See identical proteins and their annotated locations for NP_084032.1

    Status: VALIDATED

    Source sequence(s)
    AF250729, AK132316
    Consensus CDS
    CCDS35798.1
    UniProtKB/Swiss-Prot
    Q80UF4
    Related
    ENSMUSP00000027785.9, ENSMUST00000027785.15
    Conserved Domains (1) summary
    pfam15964
    Location:6710
    CCCAP; Centrosomal colon cancer autoantigen protein family

RNA

  1. NR_151682.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF250729, AK136921
    Related
    ENSMUST00000133305.8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    176642226..176848004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243501.2XP_030099361.1  serologically defined colon cancer antigen 8 homolog isoform X2

    Conserved Domains (1) summary
    pfam15964
    Location:6709
    CCCAP; Centrosomal colon cancer autoantigen protein family
  2. XM_006497025.4XP_006497088.1  serologically defined colon cancer antigen 8 homolog isoform X1

    Conserved Domains (1) summary
    pfam15964
    Location:6718
    CCCAP; Centrosomal colon cancer autoantigen protein family
  3. XM_036154304.1XP_036010197.1  serologically defined colon cancer antigen 8 homolog isoform X3

    Conserved Domains (1) summary
    pfam15964
    Location:6674
    CCCAP; Centrosomal colon cancer autoantigen protein family
  4. XM_030243510.2XP_030099370.1  serologically defined colon cancer antigen 8 homolog isoform X5

    Conserved Domains (1) summary
    pfam15964
    Location:1574
    CCCAP; Centrosomal colon cancer autoantigen protein family
  5. XM_030243513.2XP_030099373.1  serologically defined colon cancer antigen 8 homolog isoform X7

    Conserved Domains (1) summary
    pfam15964
    Location:1565
    CCCAP; Centrosomal colon cancer autoantigen protein family
  6. XM_036154309.1XP_036010202.1  serologically defined colon cancer antigen 8 homolog isoform X6

    Conserved Domains (1) summary
    pfam15964
    Location:1563
    CCCAP; Centrosomal colon cancer autoantigen protein family
  7. XM_030243505.2XP_030099365.1  serologically defined colon cancer antigen 8 homolog isoform X4

    Conserved Domains (1) summary
    pfam15964
    Location:1599
    CCCAP; Centrosomal colon cancer autoantigen protein family

RNA

  1. XR_003947262.2 RNA Sequence

    Related
    ENSMUST00000123409.8
  2. XR_003947261.2 RNA Sequence

  3. XR_004934888.1 RNA Sequence

  4. XR_004934886.1 RNA Sequence

  5. XR_003947264.2 RNA Sequence

  6. XR_004934890.1 RNA Sequence

  7. XR_003947271.1 RNA Sequence

  8. XR_003947267.2 RNA Sequence

  9. XR_003947270.2 RNA Sequence

  10. XR_003947265.2 RNA Sequence

  11. XR_004934887.1 RNA Sequence

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