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Ocel1 occludin/ELL domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 77090, updated on 23-Jun-2021

Summary

Official Symbol
Ocel1provided by MGI
Official Full Name
occludin/ELL domain containing 1provided by MGI
Primary source
MGI:MGI:1924340
See related
Ensembl:ENSMUSG00000002396
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI326022; AI593544; 9430098E02Rik
Expression
Broad expression in duodenum adult (RPKM 21.3), small intestine adult (RPKM 18.9) and 27 other tissues See more
Orthologs
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Genomic context

See Ocel1 in Genome Data Viewer
Location:
8; 8 B3.3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (71823942..71826333)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (71371298..71373689)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (73895197..73897588)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene 4HAUS augmin-like complex, subunit 8 Neighboring gene myosin IXb Neighboring gene unconventional SNARE in the ER 1 homolog (S. cerevisiae) Neighboring gene nuclear receptor subfamily 2, group F, member 6 Neighboring gene USH1 protein network component harmonin binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
occludin/ELL domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001293800.1NP_001280729.1  occludin/ELL domain-containing protein 1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1, that causes a frameshift. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AK163762
    Consensus CDS
    CCDS80892.1
    UniProtKB/TrEMBL
    D3Z3P2
    Related
    ENSMUSP00000105678.2, ENSMUST00000110051.2
  2. NM_029865.2NP_084141.2  occludin/ELL domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_084141.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC127416, AK020528, AK163762, BY542600
    Consensus CDS
    CCDS22391.1
    UniProtKB/Swiss-Prot
    Q8VCR9
    UniProtKB/TrEMBL
    G5E815
    Related
    ENSMUSP00000002469.9, ENSMUST00000002469.9
    Conserved Domains (1) summary
    pfam07303
    Location:109206
    Occludin_ELL; Occludin homology domain

RNA

  1. NR_122030.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice junction at the 3' end of an exon and lacks an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK163762, BB766991

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    71823942..71826333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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