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Zfp934 zinc finger protein 934 [ Mus musculus (house mouse) ]

Gene ID: 77117, updated on 23-Jun-2021

Summary

Official Symbol
Zfp934provided by MGI
Official Full Name
zinc finger protein 934provided by MGI
Primary source
MGI:MGI:1924367
See related
Ensembl:ENSMUSG00000074865
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6720457D02Rik
Expression
Broad expression in CNS E11.5 (RPKM 2.3), placenta adult (RPKM 1.7) and 22 other tissues See more
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Genomic context

See Zfp934 in Genome Data Viewer
Location:
13; 13 B3
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (62664609..62727170, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (62516795..62579321, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (62618157..62659959, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 935 Neighboring gene predicted gene, 21145 Neighboring gene protein C1orf43 homolog Neighboring gene predicted gene, 24095 Neighboring gene predicted gene, 38639 Neighboring gene RIKEN cDNA 6720489N17 gene Neighboring gene predicted gene, 36298

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162911.2NP_001156383.1  zinc finger protein 782 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC122357, CT030240
    Consensus CDS
    CCDS88472.1
    UniProtKB/TrEMBL
    K7N6H3
    Related
    ENSMUSP00000099083.6, ENSMUST00000101547.12
    Conserved Domains (4) summary
    COG5048
    Location:178471
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:359379
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:444
    KRAB; KRAB box
    pfam13465
    Location:147171
    zf-H2C2_2; Zinc-finger double domain
  2. NM_001360915.1NP_001347844.1  zinc finger protein 782 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon, which results in a frameshift, compared to variant 1. The encoded isoform (3) has a shorter distinct C-terminus and lacks zinc finger domains.
    Source sequence(s)
    AC122357, BY719365
    Consensus CDS
    CCDS88471.1
    Related
    ENSMUSP00000152804.2, ENSMUST00000222746.2
    Conserved Domains (1) summary
    pfam01352
    Location:444
    KRAB; KRAB box
  3. NM_175252.5NP_780461.3  zinc finger protein 782 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC122357, CT030240
    Consensus CDS
    CCDS88470.1
    Related
    ENSMUSP00000152492.2, ENSMUST00000220648.2
    Conserved Domains (3) summary
    COG5048
    Location:146439
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:115139
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    62664609..62727170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315637.3XP_017171126.1  zinc finger protein 782 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:196489
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:377397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:2262
    KRAB; KRAB box
    pfam13465
    Location:165189
    zf-H2C2_2; Zinc-finger double domain
  2. XM_030247464.1XP_030103324.1  zinc finger protein 782 isoform X3

    Conserved Domains (3) summary
    COG5048
    Location:146439
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:115139
    zf-H2C2_2; Zinc-finger double domain
  3. XM_030247463.2XP_030103323.1  zinc finger protein 782 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:183476
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:949
    KRAB; KRAB box
    pfam13465
    Location:152176
    zf-H2C2_2; Zinc-finger double domain
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