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Fam162b family with sequence similarity 162, member B [ Mus musculus (house mouse) ]

Gene ID: 77296, updated on 5-Mar-2024

Summary

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Official Symbol
Fam162bprovided by MGI
Official Full Name
family with sequence similarity 162, member Bprovided by MGI
Primary source
MGI:MGI:1924546
See related
Ensembl:ENSMUSG00000019909 AllianceGenome:MGI:1924546
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9430073N08Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAM162B (family with sequence similarity 162 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in lung adult (RPKM 6.1), stomach adult (RPKM 0.9) and 7 other tissues See more
Orthologs
human all
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Genomic context

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Location:
10 B3; 10 25.62 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (51461510..51466686, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (51585414..51590592, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40645 Neighboring gene leukocyte immunoglobulin-like receptor, subfamily B, member 4A Neighboring gene predicted gene, 46224 Neighboring gene STARR-seq mESC enhancer starr_26663 Neighboring gene G protein-coupled receptor, family C, group 6, member A Neighboring gene regulatory factor X, 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Spatial and temporal analysis of gene expression during growth and fusion of the mouse facial prominences. Feng W, et al. PLoS One, 2009 Dec 16. PMID 20016822, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein FAM162B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029894.1 → NP_084170.1  protein FAM162B

    See identical proteins and their annotated locations for NP_084170.1

    Status: VALIDATED

    Source sequence(s)
    BC147086
    Consensus CDS
    CCDS48557.1
    UniProtKB/Swiss-Prot
    Q9CX19
    UniProtKB/TrEMBL
    B2RV81
    Related
    ENSMUSP00000020064.4, ENSMUST00000020064.5
    Conserved Domains (1) summary
    pfam06388
    Location:27 → 153
    DUF1075; Protein of unknown function (DUF1075)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    51461510..51466686 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006512922.3 → XP_006512985.1  protein FAM162B isoform X1

    Conserved Domains (1) summary
    pfam06388
    Location:14 → 136
    DUF1075; Protein of unknown function (DUF1075)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CX19.1 GenPept UniProtKB/Swiss-Prot:Q9CX19

Gene LinkOut

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