U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Smim41 small integral membrane protein 41 [ Mus musculus (house mouse) ]

Gene ID: 77717, updated on 16-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Smim41provided by MGI
Official Full Name
small integral membrane protein 41provided by MGI
Primary source
MGI:MGI:1924967
See related
Ensembl:ENSMUSG00000075408 AllianceGenome:MGI:1924967
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6030408B16Rik
Summary
Orthologous to human SMIM41 (small integral membrane protein 41). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in lung adult (RPKM 12.5), subcutaneous fat pad adult (RPKM 8.4) and 6 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
15 F1; 15 56.68 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101191040..101195307)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101293163..101297426)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:101098208-101098391 Neighboring gene nuclear receptor subfamily 4, group A, member 1 Neighboring gene STARR-seq mESC enhancer starr_39794 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:101114283-101114579 Neighboring gene autophagy related 101 Neighboring gene predicted gene, 41403 Neighboring gene predicted gene, 52200 Neighboring gene keratin 80 Neighboring gene predicted gene, 35853 Neighboring gene microRNA 1941

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
small integral membrane protein 41

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001369218.1 → NP_001356147.1  small integral membrane protein 41

    Status: VALIDATED

    Source sequence(s)
    AC163018
    Consensus CDS
    CCDS88850.1
    UniProtKB/TrEMBL
    Q3UYR0
    Related
    ENSMUSP00000153762.2, ENSMUST00000191426.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    101191040..101195307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030248816.2 → XP_030104676.1  small integral membrane protein 41 isoform X1

    UniProtKB/TrEMBL
    Q3UYR0

  2. XM_030248817.2 → XP_030104677.1  small integral membrane protein 41 isoform X1

    UniProtKB/TrEMBL
    Q3UYR0
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.