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myod MyoD-family protein j [ Ciona intestinalis (vase tunicate) ]

Gene ID: 778924, updated on 21-Dec-2023

Summary

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Gene symbol
myod
Gene description
MyoD-family protein j
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
cimdfa; cimdfb
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Genomic context

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See myod in Genome Data Viewer
Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 14 NC_020179.2 (4306195..4312410, complement)

Chromosome 14 - NC_020179.2Genomic Context describing neighboring genes Neighboring gene sodium-coupled monocarboxylate transporter 1-like Neighboring gene uncharacterized LOC100176616 Neighboring gene cell wall protein IFF6-like Neighboring gene probable E3 ubiquitin-protein ligase MARCH10 Neighboring gene fibroblast growth factor receptor substrate 3 Neighboring gene presenilin-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020179.2 Chromosome 14 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The single MyoD family gene of Ciona intestinalis encodes two differentially expressed proteins: implications for the evolution of chordate muscle gene regulation. Meedel TH, et al. Development, 1997 May. PMID 9165119
  2. Mechanism of DNA replication-dependent transcriptional activation of the acetylcholinesterase gene in the Ciona intestinalis embryo. Kataoka Y, et al. Dev Growth Differ, 2009 Dec. PMID 19951326
  3. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
  4. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827
  5. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A lack of Ci-MyoD is critical to the suppression of Ci-AChE in aphidicolin-treated embryos.
    Title: Mechanism of DNA replication-dependent transcriptional activation of the acetylcholinesterase gene in the Ciona intestinalis embryo.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of myoblast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032536.2 → NP_001027708.2  transcription factor protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    EAAA01001311
    UniProtKB/TrEMBL
    A0A1W3JTC7, F6YKF5, O02191

  2. NM_001078487.1 → NP_001071955.1  transcription factor protein isoform 2

    See identical proteins and their annotated locations for NP_001071955.1

    Status: PROVISIONAL

    Source sequence(s)
    AB210563
    UniProtKB/TrEMBL
    A0A1W2VPE0, O02190, Q4H359
    Conserved Domains (2) summary
    pfam00010
    Location:394 → 445
    HLH; Helix-loop-helix DNA-binding domain
    cl11603
    Location:310 → 398
    Basic; Myogenic Basic domain

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020179.2 Reference KH Primary Assembly

    Range
    4306195..4312410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009862515.3 → XP_009860817.1  transcription factor protein isoform X1

    UniProtKB/TrEMBL
    F6YKF5
    Conserved Domains (2) summary
    pfam00010
    Location:394 → 445
    HLH; Helix-loop-helix DNA-binding domain
    cl11603
    Location:310 → 398
    Basic; Myogenic Basic domain

RNA

  1. XR_001975034.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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