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A330102I10Rik RIKEN cDNA A330102I10 gene [ Mus musculus (house mouse) ]

Gene ID: 77920, updated on 8-Feb-2024

Summary

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Official Symbol
A330102I10Rikprovided by MGI
Official Full Name
RIKEN cDNA A330102I10 geneprovided by MGI
Primary source
MGI:MGI:1925170
See related
Ensembl:ENSMUSG00000086363 AllianceGenome:MGI:1925170
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in CNS E18 (RPKM 5.1), whole brain E14.5 (RPKM 2.6) and 6 other tissues See more
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Genomic context

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See A330102I10Rik in Genome Data Viewer
Location:
13 A3.1; 13 12.89 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (29198397..29224319)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (29014414..29040336)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7217 Neighboring gene STARR-seq mESC enhancer starr_34045 Neighboring gene predicted gene, 46405 Neighboring gene predicted gene, 46406 Neighboring gene predicted gene, 52067 Neighboring gene STARR-seq mESC enhancer starr_34046 Neighboring gene SRY (sex determining region Y)-box 4 Neighboring gene predicted gene, 53781 Neighboring gene STARR-seq mESC enhancer starr_34047 Neighboring gene STARR-seq mESC enhancer starr_34048 Neighboring gene STARR-seq mESC enhancer starr_34049 Neighboring gene CDK5 regulatory subunit associated protein 1-like 1 Neighboring gene STARR-seq mESC enhancer starr_34050 Neighboring gene STARR-positive B cell enhancer ABC_E8521 Neighboring gene STARR-seq mESC enhancer starr_34055 Neighboring gene STARR-seq mESC enhancer starr_34056 Neighboring gene STARR-positive B cell enhancer mm9_chr13:29830009-29830310 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:29838382-29838565 Neighboring gene predicted gene, 52084

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045073.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longest transcript.
    Source sequence(s)
    AK020728, BE655952, BQ174124, BY284081
    Related
    ENSMUST00000145801.2

  2. NR_045074.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) is shorter and differs in an internal segment, compared to variant 1.
    Source sequence(s)
    BQ174124, BY284081, CD769769
    Related
    ENSMUST00000244816.1

  3. NR_045075.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons from the 3' end and has an alternate 3' segment, compared to variant 1.
    Source sequence(s)
    AK020728, BM941293, BY284081
    Related
    ENSMUST00000243662.1

  4. NR_045077.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two exons from the 5' end but has an alternate 5' exon, compared to variant 1.
    Source sequence(s)
    AI852110, AK020728, BM941293
    Related
    ENSMUST00000130109.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    29198397..29224319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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