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rufy3 RUN and FYVE domain containing 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779660, updated on 30-Sep-2021

Summary

Official Symbol
rufy3provided by Xenbase
Official Full Name
RUN and FYVE domain containing 3provided by Xenbase
Primary source
Xenbase:XB-GENE-1020955
See related
EnsemblRapid:ENSXETG00000023647
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ripx; singar1
Orthologs
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Genomic context

See rufy3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (78991919..79047637, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (69606442..69662261, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene deoxycytidine kinase, gene 1 Neighboring gene MOB kinase activator 1B Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1K

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC145963

General protein information

Preferred Names
protein RUFY3
Names
rap2 interacting protein x

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078746.1NP_001072214.1  protein RUFY3

    See identical proteins and their annotated locations for NP_001072214.1

    Status: PROVISIONAL

    Source sequence(s)
    BC118783
    UniProtKB/TrEMBL
    Q0VFL6
    Conserved Domains (2) summary
    pfam02759
    Location:103224
    RUN; RUN domain
    cl25732
    Location:254464
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    78991919..79047637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012964907.3XP_012820361.1  protein RUFY3 isoform X2

    Related
    ENSXETP00000066414.2, ENSXETT00000078788.2
    Conserved Domains (3) summary
    COG1196
    Location:359584
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15744
    Location:674722
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:194315
    RUN; RUN domain
  2. XM_018094279.2XP_017949768.1  protein RUFY3 isoform X4

    Related
    ENSXETP00000094687.2, ENSXETT00000090908.2
  3. XM_012964921.3XP_012820375.1  protein RUFY3 isoform X5

    Related
    ENSXETP00000073266.2, ENSXETT00000103074.2
    Conserved Domains (3) summary
    COG1196
    Location:268493
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15744
    Location:583631
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:103224
    RUN; RUN domain
  4. XM_018094275.2XP_017949764.1  protein RUFY3 isoform X3

  5. XM_018094266.2XP_017949755.1  protein RUFY3 isoform X1

    Related
    ENSXETP00000075533.2, ENSXETT00000084347.2
  6. XM_012964924.3XP_012820378.1  protein RUFY3 isoform X6

    Conserved Domains (5) summary
    cd15744
    Location:567615
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam01442
    Location:258431
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam02759
    Location:87210
    RUN; RUN domain
    cl12013
    Location:293473
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19252
    Location:191287
    MreC; rod shape-determining protein MreC
  7. XM_012964956.3XP_012820410.1  protein RUFY3 isoform X7

    Conserved Domains (3) summary
    pfam02759
    Location:121244
    RUN; RUN domain
    cl12013
    Location:327442
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19252
    Location:225321
    MreC; rod shape-determining protein MreC

RNA

  1. XR_004222620.1 RNA Sequence

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