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rufy3 RUN and FYVE domain containing 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779660, updated on 5-Mar-2024

Summary

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Official Symbol
rufy3provided by Xenbase
Official Full Name
RUN and FYVE domain containing 3provided by Xenbase
Primary source
Xenbase:XB-GENE-1020955
See related
Ensembl:ENSXETG00000023647
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ripx; singar1
Orthologs
human mouse all
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Genomic context

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See rufy3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (78991919..79047637, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (69606442..69662261, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene deoxycytidine kinase, gene 1 Neighboring gene MOB kinase activator 1B Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1K

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC145963

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein RUFY3
Names
rap2 interacting protein x

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078746.1 → NP_001072214.1  protein RUFY3

    See identical proteins and their annotated locations for NP_001072214.1

    Status: PROVISIONAL

    Source sequence(s)
    BC118783
    UniProtKB/TrEMBL
    Q0VFL6
    Conserved Domains (2) summary
    pfam02759
    Location:103 → 224
    RUN; RUN domain
    cl25732
    Location:254 → 464
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    78991919..79047637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012964907.3 → XP_012820361.1  protein RUFY3 isoform X2

    UniProtKB/TrEMBL
    A0A6I8QCZ7, A0A8J0SR80
    Related
    ENSXETP00000066414.2, ENSXETT00000078788.2
    Conserved Domains (3) summary
    COG1196
    Location:359 → 584
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15744
    Location:674 → 722
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:194 → 315
    RUN; RUN domain

  2. XM_018094279.2 → XP_017949768.1  protein RUFY3 isoform X4

    UniProtKB/TrEMBL
    A0A6I8QQT7, A0A6I8S8S2
    Related
    ENSXETP00000094687.2, ENSXETT00000090908.2

  3. XM_012964921.3 → XP_012820375.1  protein RUFY3 isoform X5

    UniProtKB/TrEMBL
    A0A6I8QQT7, A0A8J0SQ66
    Related
    ENSXETP00000073266.2, ENSXETT00000103074.2
    Conserved Domains (3) summary
    COG1196
    Location:268 → 493
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15744
    Location:583 → 631
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:103 → 224
    RUN; RUN domain

  4. XM_018094275.2 → XP_017949764.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A6I8QQT7, A0A8J0T140

  5. XM_018094266.2 → XP_017949755.1  protein RUFY3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QQT7, A0A8J0T135
    Related
    ENSXETP00000075533.2, ENSXETT00000084347.2

  6. XM_012964924.3 → XP_012820378.1  protein RUFY3 isoform X6

    UniProtKB/TrEMBL
    A0A6I8QQT7, A0A8J0SNL9
    Conserved Domains (5) summary
    cd15744
    Location:567 → 615
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam01442
    Location:258 → 431
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam02759
    Location:87 → 210
    RUN; RUN domain
    cl12013
    Location:293 → 473
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19252
    Location:191 → 287
    MreC; rod shape-determining protein MreC

  7. XM_012964956.3 → XP_012820410.1  protein RUFY3 isoform X7

    UniProtKB/TrEMBL
    A0A8J0SGP6
    Conserved Domains (3) summary
    pfam02759
    Location:121 → 244
    RUN; RUN domain
    cl12013
    Location:327 → 442
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19252
    Location:225 → 321
    MreC; rod shape-determining protein MreC

RNA

  1. XR_004222620.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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