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otud4 OTU deubiquitinase 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780053, updated on 30-Sep-2021

Summary

Official Symbol
otud4provided by Xenbase
Official Full Name
OTU deubiquitinase 4provided by Xenbase
Primary source
Xenbase:XB-GENE-5900161
See related
EnsemblRapid:ENSXETG00000017606
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

See otud4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (59080403..59123497, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (49680312..49716428, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408300 Neighboring gene anaphase promoting complex subunit 10 Neighboring gene ATP binding cassette subfamily E member 1 Neighboring gene FRAS1 related extracellular matrix 3 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC146189

General protein information

Preferred Names
OTU domain-containing protein 4
Names
HIV-1 induced protein HIN-1
OTU domain containing 4
NP_001072598.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079130.1NP_001072598.1  OTU domain-containing protein 4

    See identical proteins and their annotated locations for NP_001072598.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122971
    UniProtKB/TrEMBL
    Q0IHU0
    Related
    ENSXETP00000038231.3, ENSXETT00000038231.4
    Conserved Domains (2) summary
    cd04508
    Location:282330
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36115
    OTU; OTU-like cysteine protease

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    59080403..59123497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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