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C030004G16Rik RIKEN cDNA C030004G16 gene [ Mus musculus (house mouse) ]

Gene ID: 78536, updated on 8-Feb-2024

Summary

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Official Symbol
C030004G16Rikprovided by MGI
Official Full Name
RIKEN cDNA C030004G16 geneprovided by MGI
Primary source
MGI:MGI:1925786
See related
AllianceGenome:MGI:1925786
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
18; 18 B3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (42748683..42756907, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (42615618..42623817, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:42670844-42671027 Neighboring gene STARR-seq mESC enhancer starr_44443 Neighboring gene transcription elongation regulator 1 (CA150) Neighboring gene STARR-positive B cell enhancer mm9_chr18:42717560-42717861 Neighboring gene STARR-positive B cell enhancer ABC_E400 Neighboring gene G protein-coupled receptor 151 Neighboring gene STARR-seq mESC enhancer starr_44444 Neighboring gene protein phosphatase 2, regulatory subunit B, beta Neighboring gene predicted gene, 41713 Neighboring gene STARR-seq mESC enhancer starr_44445 Neighboring gene STARR-seq mESC enhancer starr_44446 Neighboring gene predicted gene, 52345

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    42748683..42756907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004939925.1 RNA Sequence

  2. XR_004939920.1 RNA Sequence

  3. XR_004939919.1 RNA Sequence

  4. XR_004939924.1 RNA Sequence

  5. XR_004939927.1 RNA Sequence

  6. XR_004939929.1 RNA Sequence

  7. XR_004939922.1 RNA Sequence

  8. XR_004939930.1 RNA Sequence

  9. XR_004939928.1 RNA Sequence

  10. XR_001782540.2 RNA Sequence

  11. XR_004939926.1 RNA Sequence

  12. XR_003952619.1 RNA Sequence

  13. XR_004939923.1 RNA Sequence

  14. XR_004939921.1 RNA Sequence

  15. XR_004939918.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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