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TLCD3B TLC domain containing 3B [ Bos taurus (cattle) ]

Gene ID: 785988, updated on 5-Mar-2024

Summary

Official Symbol
TLCD3Bprovided by VGNC
Official Full Name
TLC domain containing 3Bprovided by VGNC
Primary source
VGNC:VGNC:28823
See related
Ensembl:ENSBTAG00000005033
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
FAM57B
Orthologs
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Genomic context

Location:
chromosome: 25
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (26235827..26247629)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene late cornified envelope-like proline-rich protein 1 Neighboring gene aldolase, fructose-bisphosphate A Neighboring gene uncharacterized LOC132343861 Neighboring gene chromosome 25 C16orf92 homolog Neighboring gene double C2 domain alpha Neighboring gene INO80 complex subunit E Neighboring gene HIRA interacting protein 3

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine N-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
ceramide synthase
Names
TLC domain ceramide synthase 3B
family with sequence similarity 57 member B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105465.2NP_001098935.1  ceramide synthase

    See identical proteins and their annotated locations for NP_001098935.1

    Status: PROVISIONAL

    Source sequence(s)
    BC153234
    UniProtKB/TrEMBL
    A7Z036, F6R1N1
    Related
    ENSBTAP00000006632.6, ENSBTAT00000006632.6
    Conserved Domains (1) summary
    smart00724
    Location:40261
    TLC; TRAM, LAG1 and CLN8 homology domains

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    26235827..26247629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881452.1XP_059737435.1  ceramide synthase isoform X1

  2. XM_024985071.2XP_024840839.1  ceramide synthase isoform X2

    Conserved Domains (1) summary
    smart00724
    Location:40261
    TLC; TRAM, LAG1 and CLN8 homology domains
  3. XM_059881453.1XP_059737436.1  ceramide synthase isoform X2

    Related
    ENSBTAP00000087854.1, ENSBTAT00000129636.1