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Ttc30a1 tetratricopeptide repeat domain 30A1 [ Mus musculus (house mouse) ]

Gene ID: 78802, updated on 23-Jun-2021

Summary

Official Symbol
Ttc30a1provided by MGI
Official Full Name
tetratricopeptide repeat domain 30A1provided by MGI
Primary source
MGI:MGI:1926052
See related
Ensembl:ENSMUSG00000075271
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930506L13Rik
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Genomic context

See Ttc30a1 in Genome Data Viewer
Location:
2; 2 C3
Exon count:
1
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (75809450..75812311, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (75979106..75981967, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (75817163..75820024, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 54164 Neighboring gene tetratricopeptide repeat domain 30A2 Neighboring gene phosphodiesterase 11A Neighboring gene predicted gene, 52518 Neighboring gene cytochrome c, testis

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables intraciliary transport particle B binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables intraciliary transport particle B binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within intraciliary anterograde transport IC
Inferred by Curator
more info
PubMed 
involved_in intraciliary transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in axonemal microtubule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in centrosome IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cilium IDA
Inferred from Direct Assay
more info
PubMed 
part_of intraciliary transport particle B IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of intraciliary transport particle B IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
tetratricopeptide repeat protein 30A1
Names
TPR repeat protein 30A1
novel tetratrico peptide repeat (TPR) containing protein
tetratricopeptide repeat domain 30A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030188.3NP_084464.3  tetratricopeptide repeat protein 30A1

    See identical proteins and their annotated locations for NP_084464.3

    Status: VALIDATED

    Source sequence(s)
    AK045096, BU610816
    Consensus CDS
    CCDS16154.1
    UniProtKB/Swiss-Prot
    Q99J38
    Related
    ENSMUSP00000097574.4, ENSMUST00000099994.5
    Conserved Domains (3) summary
    sd00006
    Location:4474
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:152215
    TPR_11; TPR repeat
    pfam14559
    Location:2187
    TPR_19; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    75809450..75812311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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