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Igsf3 immunoglobulin superfamily, member 3 [ Mus musculus (house mouse) ]

Gene ID: 78908, updated on 23-Jun-2021

Summary

Official Symbol
Igsf3provided by MGI
Official Full Name
immunoglobulin superfamily, member 3provided by MGI
Primary source
MGI:MGI:1926158
See related
Ensembl:ENSMUSG00000042035
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA0466; 1700016K10Rik; 2810035F16Rik; 4833439O17Rik
Expression
Ubiquitous expression in ovary adult (RPKM 8.2), limb E14.5 (RPKM 8.0) and 26 other tissues See more
Orthologs
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Genomic context

See Igsf3 in Genome Data Viewer
Location:
3 F2.2; 3 44.3 cM
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (101284301..101370376)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (101376672..101463060)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (101181048..101266983)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RAN guanine nucleotide release factor pseudogene Neighboring gene predicted gene, 32900 Neighboring gene VISTA enhancer mm1505 Neighboring gene predicted gene, 40109 Neighboring gene predicted gene, 33162

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in lacrimal gland development ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
immunoglobulin superfamily member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207205.2NP_997088.2  immunoglobulin superfamily member 3 precursor

    See identical proteins and their annotated locations for NP_997088.2

    Status: VALIDATED

    Source sequence(s)
    AC131184
    Consensus CDS
    CCDS17682.1
    UniProtKB/Swiss-Prot
    Q6ZQA6
    Related
    ENSMUSP00000048900.6, ENSMUST00000043983.11
    Conserved Domains (3) summary
    smart00410
    Location:293389
    IG_like; Immunoglobulin like
    pfam07686
    Location:687784
    V-set; Immunoglobulin V-set domain
    cl11960
    Location:162256
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    101284301..101370376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006502342.5XP_006502405.1  immunoglobulin superfamily member 3 isoform X1

    See identical proteins and their annotated locations for XP_006502405.1

    UniProtKB/TrEMBL
    A0A0A6YX40
    Related
    ENSMUSP00000141823.2, ENSMUST00000195164.2
    Conserved Domains (3) summary
    smart00409
    Location:293389
    IG; Immunoglobulin
    pfam07686
    Location:707804
    V-set; Immunoglobulin V-set domain
    cl11960
    Location:162256
    Ig; Immunoglobulin domain
  2. XM_006502343.5XP_006502406.1  immunoglobulin superfamily member 3 isoform X1

    See identical proteins and their annotated locations for XP_006502406.1

    UniProtKB/TrEMBL
    A0A0A6YX40
    Conserved Domains (3) summary
    smart00409
    Location:293389
    IG; Immunoglobulin
    pfam07686
    Location:707804
    V-set; Immunoglobulin V-set domain
    cl11960
    Location:162256
    Ig; Immunoglobulin domain
  3. XM_030252915.2XP_030108775.1  immunoglobulin superfamily member 3 isoform X3

    Conserved Domains (3) summary
    smart00410
    Location:293389
    IG_like; Immunoglobulin like
    pfam07686
    Location:687784
    V-set; Immunoglobulin V-set domain
    cl11960
    Location:162256
    Ig; Immunoglobulin domain
  4. XM_036163417.1XP_036019310.1  immunoglobulin superfamily member 3 isoform X2

    Conserved Domains (5) summary
    smart00409
    Location:293389
    IG; Immunoglobulin
    pfam07686
    Location:706803
    V-set; Immunoglobulin V-set domain
    cd00096
    Location:708711
    Ig; Ig strand A' [structural motif]
    cd00099
    Location:152251
    IgV; Immunoglobulin variable domain (IgV)
    cl11960
    Location:840939
    Ig; Immunoglobulin domain
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