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Fndc8 fibronectin type III domain containing 8 [ Mus musculus (house mouse) ]

Gene ID: 78919, updated on 5-Mar-2024

Summary

Official Symbol
Fndc8provided by MGI
Official Full Name
fibronectin type III domain containing 8provided by MGI
Primary source
MGI:MGI:1926169
See related
Ensembl:ENSMUSG00000018844 AllianceGenome:MGI:1926169
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930466G16Rik
Summary
Orthologous to human FNDC8 (fibronectin type III domain containing 8). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 49.8) and frontal lobe adult (RPKM 1.0) See more
Orthologs
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Genomic context

Location:
11 C; 11 50.3 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (82782971..82791563)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (82892145..82900737)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ligase III, DNA, ATP-dependent Neighboring gene ring finger and FYVE like domain containing protein Neighboring gene STARR-seq mESC enhancer starr_30179 Neighboring gene RAD51 paralog D Neighboring gene STARR-positive B cell enhancer ABC_E8433 Neighboring gene notchless homolog 1 Neighboring gene unc-45 myosin chaperone B Neighboring gene unc-45 myosin chaperone B, opposite strand

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Endonuclease-mediated (1)  1 citation

General protein information

Preferred Names
fibronectin type III domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030224.1NP_084500.1  fibronectin type III domain-containing protein 8

    See identical proteins and their annotated locations for NP_084500.1

    Status: PROVISIONAL

    Source sequence(s)
    BC120835
    Consensus CDS
    CCDS25151.1
    UniProtKB/Swiss-Prot
    Q8BUG1, Q9D2H8
    UniProtKB/TrEMBL
    B2RQ03
    Related
    ENSMUSP00000018988.6, ENSMUST00000018988.6
    Conserved Domains (1) summary
    pfam00041
    Location:186266
    fn3; Fibronectin type III domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    82782971..82791563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)