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Saal1 serum amyloid A-like 1 [ Mus musculus (house mouse) ]

Gene ID: 78935, updated on 23-Jun-2021

Summary

Official Symbol
Saal1provided by MGI
Official Full Name
serum amyloid A-like 1provided by MGI
Primary source
MGI:MGI:1926185
See related
Ensembl:ENSMUSG00000006763
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SPACIA1; 5031425D22Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 5.2), limb E14.5 (RPKM 4.0) and 28 other tissues See more
Orthologs
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Genomic context

See Saal1 in Genome Data Viewer
Location:
7; 7 B3
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (46335532..46360113, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (46686108..46710690, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (53941478..53966021, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene secretion regulating guanine nucleotide exchange factor Neighboring gene predicted gene, 22969 Neighboring gene tryptophan hydroxylase 1 Neighboring gene predicted gene, 31882 Neighboring gene serum amyloid A 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of synoviocyte proliferation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein SAAL1
Names
synoviocyte proliferation-associated in collagen-induced arthritis 1
synoviocyte proliferation-associated in collagen-induced arthritis protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030233.1NP_084509.1  protein SAAL1

    See identical proteins and their annotated locations for NP_084509.1

    Status: PROVISIONAL

    Source sequence(s)
    AK132193
    Consensus CDS
    CCDS52253.1
    UniProtKB/Swiss-Prot
    Q9D2C2
    UniProtKB/TrEMBL
    G1UCX4
    Related
    ENSMUSP00000120658.2, ENSMUST00000143082.4

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    46335532..46360113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006541317.4XP_006541380.1  protein SAAL1 isoform X1

RNA

  1. XR_004934223.1 RNA Sequence

  2. XR_003946600.2 RNA Sequence

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