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Zeb1os1 zinc finger E-box binding homeobox 1, opposite strand 1 [ Mus musculus (house mouse) ]

Gene ID: 791318, updated on 8-Feb-2024

Summary

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Official Symbol
Zeb1os1provided by MGI
Official Full Name
zinc finger E-box binding homeobox 1, opposite strand 1provided by MGI
Primary source
MGI:MGI:3642044
See related
Ensembl:ENSMUSG00000063087 AllianceGenome:MGI:3642044
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zeb1os; Gm10125
Summary
Orthologous to human ZEB1-AS1 (ZEB1 antisense RNA 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 2.3), cerebellum adult (RPKM 1.2) and 18 other tissues See more
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Genomic context

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Location:
18 A1; 18 3.71 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (5491501..5592437, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (5491501..5592437, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52372 Neighboring gene STARR-seq mESC enhancer starr_43695 Neighboring gene predicted gene, 34630 Neighboring gene STARR-seq mESC enhancer starr_43697 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:5591157-5591340 Neighboring gene STARR-positive B cell enhancer mm9_chr18:5591593-5591893 Neighboring gene predicted gene, 52340 Neighboring gene predicted gene 2238 Neighboring gene zinc finger E-box binding homeobox 1 Neighboring gene STARR-seq mESC enhancer starr_43699 Neighboring gene predicted gene, 34740 Neighboring gene predicted gene, 34804

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A noncoding point mutation of Zeb1 causes multiple developmental malformations and obesity in Twirler mice. Kurima K, et al. PLoS Genet, 2011 Sep. PMID 21980308, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033552.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC121576, AC127028
    Related
    ENSMUST00000161921.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    5491501..5592437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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