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si:ch211-217k17.9 si:ch211-217k17.9 [ Danio rerio (zebrafish) ]

Gene ID: 798921, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch211-217k17.9provided by ZNC
Official Full Name
si:ch211-217k17.9provided by ZNC
Primary source
ZFIN:ZDB-GENE-061207-21
See related
AllianceGenome:ZFIN:ZDB-GENE-061207-21
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:ch211-217k17.9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (52376346..52400667)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene si:dkey-121b10.7 Neighboring gene mucin-2-like Neighboring gene si:ch211-217k17.12 Neighboring gene zgc:194101

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007112.7 Chromosome 1 Reference GRCz11 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Protein Arginine Methyltransferase 6 (Prmt6) Is Essential for Early Zebrafish Development through the Direct Suppression of gadd45αa Stress Sensor Gene. Zhao XX, et al. J Biol Chem, 2016 Jan 1. PMID 26487724, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
putative uncharacterized protein DDB_G0282133

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    52376346..52400667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478016.1 → XP_021333691.1  putative uncharacterized protein DDB_G0282133

    UniProtKB/TrEMBL
    A0A8M9QD56
    Conserved Domains (2) summary
    sd00036
    Location:765 → 784
    LRR_3; leucine-rich repeat [structural motif]
    cl02507
    Location:589 → 663
    SEA; SEA domain
Nucleotide Protein Strain
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