U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC8040254 solute carrier organic anion transporter family member 5A1 [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8040254, updated on 26-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
LOC8040254
Gene description
solute carrier organic anion transporter family member 5A1
See related
VectorBase:ISCP_009607; EnsemblRapid:LOC8040254
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
Also known as
oatp4056
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609857.1 (104935927..105603031)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024389242.1 (64145..264229, complement)

NW_024609857.1Genomic Context describing neighboring genes Neighboring gene MICOS complex subunit MIC27 Neighboring gene uncharacterized LOC121836780 Neighboring gene zinc finger C2HC domain-containing protein 1A Neighboring gene uncharacterized LOC121836559 Neighboring gene solute carrier organic anion transporter family member 74D Neighboring gene uncharacterized LOC121836560 Neighboring gene uncharacterized LOC8038406 Neighboring gene uncharacterized LOC121836561 Neighboring gene uncharacterized LOC8051545 Neighboring gene solute carrier organic anion transporter family member 74D Neighboring gene uncharacterized LOC8051543 Neighboring gene glutathione S-transferase omega-1-like Neighboring gene transcription initiation factor TFIID subunit 4-like Neighboring gene tigger transposable element-derived protein 6-like Neighboring gene pyrimidodiazepine synthase Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene glutathione S-transferase omega-1 Neighboring gene glutathione S-transferase omega-1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Repression of tick microRNA-133 induces organic anion transporting polypeptide expression critical for Anaplasma phagocytophilum survival in the vector and transmission to the vertebrate host. Ramasamy E, et al. PLoS Genet, 2020 Jul. PMID 32614824, Free PMC Article
  2. Comparative bioinformatics, temporal and spatial expression analyses of Ixodes scapularis organic anion transporting polypeptides. Radulović Z, et al. Ticks Tick Borne Dis, 2014 Apr. PMID 24582512, Free PMC Article
  3. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sodium-independent organic anion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sodium-independent organic anion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
solute carrier organic anion transporter family member 5A1
Names
organic anion transporting polypeptide
organic anion transporting protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609857.1 Reference ASM1692078v2

    Range
    104935927..105603031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042291979.1 → XP_042147913.1  solute carrier organic anion transporter family member 5A1 isoform X1

    UniProtKB/TrEMBL
    A0A7D5FZN5
    Related
    XP_042147913.1, XM_042291979.1
    Conserved Domains (1) summary
    cd17404
    Location:158 → 716
    MFS_SLCO5_OATP5; Solute carrier organic anion transporter 5 family of the Major Facilitator Superfamily of transporters

  2. XM_029974800.4 → XP_029830660.3  solute carrier organic anion transporter family member 5A1 isoform X2

    UniProtKB/TrEMBL
    A0A7D5FZN5
    Related
    XP_029830660.3, XM_029974800.4
    Conserved Domains (1) summary
    cd17404
    Location:158 → 715
    MFS_SLCO5_OATP5; Solute carrier organic anion transporter 5 family of the Major Facilitator Superfamily of transporters

  3. XM_029974797.4 → XP_029830657.3  solute carrier organic anion transporter family member 5A1 isoform X1

    UniProtKB/TrEMBL
    A0A7D5FZN5
    Related
    XP_029830657.3, XM_029974797.4
    Conserved Domains (1) summary
    cd17404
    Location:158 → 716
    MFS_SLCO5_OATP5; Solute carrier organic anion transporter 5 family of the Major Facilitator Superfamily of transporters

  4. XM_042291980.1 → XP_042147914.1  solute carrier organic anion transporter family member 5A1 isoform X1

    UniProtKB/TrEMBL
    A0A7D5FZN5
    Related
    XP_042147914.1, XM_042291980.1
    Conserved Domains (1) summary
    cd17404
    Location:158 → 716
    MFS_SLCO5_OATP5; Solute carrier organic anion transporter 5 family of the Major Facilitator Superfamily of transporters
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases