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Clca3a2 chloride channel accessory 3A2 [ Mus musculus (house mouse) ]

Gene ID: 80797, updated on 23-Jun-2021

Summary

Official Symbol
Clca3a2provided by MGI
Official Full Name
chloride channel accessory 3A2provided by MGI
Primary source
MGI:MGI:1931471
See related
Ensembl:ENSMUSG00000028262
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Clc; Clca2
Expression
Biased expression in large intestine adult (RPKM 6.3), mammary gland adult (RPKM 6.1) and 11 other tissues See more
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Genomic context

See Clca3a2 in Genome Data Viewer
Location:
3; 3 H2
Exon count:
16
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (144486340..144525385, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (144780581..144819623, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (144459523..144482458, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene BCL2/adenovirus E1B interacting protein 3 pseudogene Neighboring gene chloride channel accessory 3A1 Neighboring gene predicted gene, 34866 Neighboring gene nuclear receptor subfamily 5, group A, member 2 pseudogene Neighboring gene chloride channel accessory 3B Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 pseudogene Neighboring gene calcium-activated chloride channel regulator 4A-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
chloride channel calcium activated 3A2
Names
chloride channel calcium activated 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030601.3NP_085104.1  chloride channel calcium activated 3A2 precursor

    See identical proteins and their annotated locations for NP_085104.1

    Status: VALIDATED

    Source sequence(s)
    AC137128, AF115852
    Consensus CDS
    CCDS17887.1
    UniProtKB/TrEMBL
    Q9EQR4
    Related
    ENSMUSP00000029929.8, ENSMUST00000029929.12
    Conserved Domains (3) summary
    TIGR00868
    Location:1865
    hCaCC; calcium-activated chloride channel protein 1
    cd00198
    Location:307461
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl19929
    Location:529569
    A2M_N; MG2 domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    144486340..144525385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017319812.3XP_017175301.1  chloride channel calcium activated 3A2 isoform X2

    Conserved Domains (1) summary
    TIGR00868
    Location:15802
    hCaCC; calcium-activated chloride channel protein 1
  2. XM_017319811.3XP_017175300.1  chloride channel calcium activated 3A2 isoform X1

    Conserved Domains (1) summary
    TIGR00868
    Location:15810
    hCaCC; calcium-activated chloride channel protein 1
  3. XM_006502346.4XP_006502409.1  chloride channel calcium activated 3A2 isoform X3

    Conserved Domains (1) summary
    TIGR00868
    Location:15579
    hCaCC; calcium-activated chloride channel protein 1
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