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Camlg calcium modulating ligand [ Rattus norvegicus (Norway rat) ]

Gene ID: 81715, updated on 22-Aug-2021

Summary

Official Symbol
Camlgprovided by RGD
Official Full Name
calcium modulating ligandprovided by RGD
Primary source
RGD:69297
See related
Ensembl:ENSRNOG00000021911
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Caml
Summary
binds to cyclophilin B [RGD, Feb 2006]
Expression
Biased expression in Testes (RPKM 57.1), Brain (RPKM 56.8) and 9 other tissues See more
Orthologs
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Genomic context

See Camlg in Genome Data Viewer
Location:
17p14
Exon count:
5
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (8992697..9003576, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (9523792..9534683, complement)

Chromosome 17 - NC_051352.1Genomic Context describing neighboring genes Neighboring gene similar to RIKEN cDNA B230219D22 Neighboring gene DEAD-box helicase 46 Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene beta-1,4-galactosyltransferase 7 Neighboring gene transmembrane p24 trafficking protein 9

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables cell adhesion molecule binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables ubiquitin protein ligase binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of GET complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of GET complex IPI
Inferred from Physical Interaction
more info
PubMed 
part_of GET complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in integral component of endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
guided entry of tail-anchored proteins factor CAMLG; calcium signal-modulating cyclophilin ligand

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053334.2NP_445786.2  guided entry of tail-anchored proteins factor CAMLG

    Status: PROVISIONAL

    Source sequence(s)
    JACYVU010000284
    Conserved Domains (1) summary
    pfam14963
    Location:21290
    CAML; Calcium signal-modulating cyclophilin ligand

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051352.1 Reference mRatBN7.2 Primary Assembly

    Range
    8992697..9003576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006253660.4XP_006253722.1  calcium signal-modulating cyclophilin ligand isoform X3

    See identical proteins and their annotated locations for XP_006253722.1

    Conserved Domains (1) summary
    pfam14963
    Location:21210
    CAML; Calcium signal-modulating cyclophilin ligand
  2. XM_006253659.4XP_006253721.1  calcium signal-modulating cyclophilin ligand isoform X2

    Conserved Domains (1) summary
    pfam14963
    Location:21269
    CAML; Calcium signal-modulating cyclophilin ligand
  3. XM_006253658.4XP_006253720.1  calcium signal-modulating cyclophilin ligand isoform X1

    See identical proteins and their annotated locations for XP_006253720.1

    UniProtKB/TrEMBL
    Q6DGG9
    Related
    ENSRNOP00000033945.5
    Conserved Domains (1) summary
    pfam14963
    Location:21291
    CAML; Calcium signal-modulating cyclophilin ligand
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