Rpl36al1 ribosomal protein L36A like 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Rpl36al1provided by RGD
Official Full Name: ribosomal protein L36A like 1provided by RGD
Primary source: RGD:621156
See related: AllianceGenome:RGD:621156
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Rpl36al
Summary: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to act upstream of or within response to retinoic acid. Predicted to be located in several cellular components, including cytosol; endoplasmic reticulum; and nucleus. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL36AL (ribosomal protein L36a like). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Liver (RPKM 1084.5), Spleen (RPKM 1007.6) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 6q24

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	6	NC_086024.1 (93390864..93392258, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	6	NC_051341.1 (87654808..87656202, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	18	NC_005117.4 (1504178..1505581)

Chromosome 6 - NC_086024.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
acts_upstream_of_or_within response to organic substance	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within response to retinoic acid	ISO Inferred from Sequence Orthology more info
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytosol	ISO Inferred from Sequence Orthology more info
part_of cytosolic large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
located_in endoplasmic reticulum	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISO Inferred from Sequence Orthology more info
located_in plasma membrane	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: large ribosomal subunit protein eL42

Names: 60S ribosomal protein L36a; 60S ribosomal protein L44; large subunit ribosomal protein L36a; ribosomal protein L36A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_031105.2 → NP_112367.1 large ribosomal subunit protein eL42

See identical proteins and their annotated locations for NP_112367.1

Status: VALIDATED

Source sequence(s)

AA955285, BC058142

UniProtKB/Swiss-Prot

P83883

UniProtKB/TrEMBL

B2RYQ8, F8WFR5

Conserved Domains (1) summary

PTZ00157
Location:1 → 86

PTZ00157; 60S ribosomal protein L36a; Provisional