U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT2G34250 SecY protein transport family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817986, updated on 7-Sep-2023

Summary

Go to the top of the page Help
Gene symbol
AT2G34250
Gene description
SecY protein transport family protein
Primary source
Araport:AT2G34250
Locus tag
AT2G34250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13P17.9; F13P17_9
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (14462023..14464879)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ubiquitin carboxyl-terminal hydrolase-like protein, putative (Protein with domains of unknown function DUF627 and DUF632) Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. 2in1 Vectors Improve In Planta BiFC and FRET Analyses. Mehlhorn DG, et al. Methods Mol Biol, 2018. PMID 29043675
  2. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
  3. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
  4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001036399.1
NM_001336500.1
NM_128976.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in endoplasmic reticulum membrane IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SecY protein transport family protein
NP_001031476.1
  • SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: response to salt stress, protein secretion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT1G29310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_180972.1
  • SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: response to salt stress, protein secretion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT1G29310.1); Has 4557 Blast hits to 4550 proteins in 2034 species: Archae - 275; Bacteria - 3091; Metazoa - 262; Fungi - 228; Plants - 170; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14462023..14464879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128976.4 → NP_180972.1  SecY protein transport family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180972.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VW89, A0A384LBY8, A0A5S9W9Y0, A0A654EF34, O80774
    Conserved Domains (1) summary
    PTZ00219
    Location:1 → 473
    PTZ00219; Sec61 alpha subunit; Provisional

  2. NM_001036399.1 → NP_001031476.1  SecY protein transport family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031476.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VW89, A0A384LBY8, A0A5S9W9Y0, A0A654EF34, O80774
    Conserved Domains (1) summary
    PTZ00219
    Location:1 → 473
    PTZ00219; Sec61 alpha subunit; Provisional

  3. NM_001336500.1 → NP_001324290.1  SecY protein transport family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VW89, A0A384LBY8, A0A5S9W9Y0, A0A654EF34, O80774
    Conserved Domains (1) summary
    PTZ00219
    Location:1 → 473
    PTZ00219; Sec61 alpha subunit; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools