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AT3G11230 Yippee family putative zinc-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820293, updated on 7-Sep-2023

Summary

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Gene symbol
AT3G11230
Gene description
Yippee family putative zinc-binding protein
Primary source
Araport:AT3G11230
Locus tag
AT3G11230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (3516563..3518477)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene alfin-like 2 Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene Paxneb protein-like protein Neighboring gene arginine-tRNA protein transferase 2 Neighboring gene Ribosomal protein L10 family protein Neighboring gene WUSCHEL related homeobox 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001084666.2
NM_001337917.1
NM_001337918.1
NM_111958.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Yippee family putative zinc-binding protein
NP_001078135.1
  • Yippee family putative zinc-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 983 Blast hits to 983 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 469; Fungi - 200; Plants - 237; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
NP_566389.1
  • Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 985 Blast hits to 985 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 469; Fungi - 205; Plants - 238; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3516563..3518477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084666.2 → NP_001078135.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078135.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XB42, A8MQA7
    Conserved Domains (1) summary
    cl13152
    Location:47 → 134
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

  2. NM_001337917.1 → NP_001327326.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRZ0

  3. NM_001337918.1 → NP_001327325.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRY9

  4. NM_111958.5 → NP_566389.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566389.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L918, Q9C777
    UniProtKB/TrEMBL
    A0A178VKT2, A0A384KS80, A0A5S9XB42, Q0WT38
    Conserved Domains (1) summary
    cl13152
    Location:14 → 101
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C777.1

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