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AT3G02890 RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821192, updated on 6-Oct-2023

Summary

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Gene symbol
AT3G02890
Gene description
RING/FYVE/PHD zinc finger superfamily protein
Primary source
Araport:AT3G02890
Locus tag
AT3G02890
See related
TAIR:AT3G02890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13E7.16; F13E7_16
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Genomic context

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See AT3G02890 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Sequence:
Chromosome: 3; NC_003074.8 (640169..645692)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene GAST1 protein homolog 5 Neighboring gene Low-density receptor-like protein Neighboring gene ncRNA Neighboring gene AIG2-like (avirulence induced gene) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001337442.1
NM_001337443.1
NM_001337444.1
NM_111159.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables histone reader activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of gene expression, epigenetic IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within negative regulation of transcription elongation by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_negative_effect regulation of photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/FYVE/PHD zinc finger superfamily protein
NP_186939.2
  • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G16680.1); Has 3422 Blast hits to 2706 proteins in 325 species: Archae - 2; Bacteria - 367; Metazoa - 1746; Fungi - 295; Plants - 487; Viruses - 5; Other Eukaryotes - 520 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    640169..645692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111159.3 → NP_186939.2  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186939.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IYH6, Q9M8T1
    UniProtKB/TrEMBL
    A0A5S9X9M7, A0A654F4Y6
    Conserved Domains (1) summary
    cl22851
    Location:215 → 260
    PHD_SF; PHD finger superfamily

  2. NM_001337442.1 → NP_001325442.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LL91, A0A7G2EHQ2

  3. NM_001337443.1 → NP_001325441.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCC4, A0A1I9LL90

  4. NM_001337444.1 → NP_001325443.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCC4, A0A1I9LL92
Nucleotide Protein
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