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AT3G23080 Polyketide cyclase/dehydrase and lipid transport superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821882, updated on 15-Feb-2024

Summary

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Gene symbol
AT3G23080
Gene description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Primary source
Araport:AT3G23080
Locus tag
AT3G23080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See AT3G23080 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (8207287..8209329, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene indole-3-acetic acid 7 Neighboring gene RING/U-box superfamily protein Neighboring gene CRM family member 3A Neighboring gene pseudo Neighboring gene TPX2 (targeting protein for Xklp2) protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001035667.1
NM_001338612.1
NM_113208.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Polyketide cyclase/dehydrase and lipid transport superfamily protein
NP_001030744.1
  • Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT4G14500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_566722.1
  • Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT4G14500.1); Has 367 Blast hits to 366 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8207287..8209329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001035667.1 → NP_001030744.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030744.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EKK0, F4J2V1
    Conserved Domains (1) summary
    cd08870
    Location:88 → 298
    START_STARD2_7-like; Lipid-binding START domain of mammalian STARD2, -7, and related proteins

  2. NM_113208.3 → NP_566722.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566722.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q93ZZ1, Q9LS84
    Conserved Domains (1) summary
    cd08870
    Location:119 → 329
    START_STARD2_7-like; Lipid-binding START domain of mammalian STARD2, -7, and related proteins

  3. NM_001338612.1 → NP_001325639.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EKK0, F4J2V1
Nucleotide Protein
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