AT3G53580 diaminopimelate epimerase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: AT3G53580
Gene description: diaminopimelate epimerase family protein
Primary source: Araport:AT3G53580
Locus tag: AT3G53580
See related: TAIR:AT3G53580
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See AT3G53580 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 9

Sequence:: Chromosome: 3; NC_003074.8 (19864631..19867134)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Stereochemical control in catalysis is achieved by means of a highly symmetric catalytic site that can accommodate both the L and D stereogenic centers of DAP at the proximal site
Title: Crystal structure of diaminopimelate epimerase from Arabidopsis thaliana, an amino acid racemase critical for L-lysine biosynthesis.

Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

MASC_STS16130 (e-PCR)
- UniSTS:258851

Homology

Orthologs from OrthoDB

NM_115218.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables diaminopimelate epimerase activity	IEA Inferred from Electronic Annotation more info
enables diaminopimelate epimerase activity	IGI Inferred from Genetic Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in lysine biosynthetic process via diaminopimelate	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast stroma	HDA more info	PubMed

General protein information

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Preferred Names: diaminopimelate epimerase family protein

NP_190926.1

diaminopimelate epimerase family protein; FUNCTIONS IN: diaminopimelate epimerase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diaminopimelate epimerase, active site (InterPro:IPR018510), Diaminopimelate epimerase (InterPro:IPR001653); Has 7123 Blast hits to 7119 proteins in 2112 species: Archae - 88; Bacteria - 4300; Metazoa - 6; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 2667 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

19864631..19867134

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_115218.4 → NP_190926.1 diaminopimelate epimerase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_190926.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9LFG2

UniProtKB/TrEMBL

A0A178VGB4, A0A654FFI7

Conserved Domains (1) summary

PLN02536
Location:93 → 362

PLN02536; diaminopimelate epimerase