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AT3G63230 senescence-associated-like protein (DUF581) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825498, updated on 6-Oct-2023

Summary

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Gene symbol
AT3G63230
Gene description
senescence-associated-like protein (DUF581)
Primary source
Araport:AT3G63230
Locus tag
AT3G63230
See related
TAIR:AT3G63230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See AT3G63230 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (23359633..23360338)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mediator of aba-regulated dormancy protein (DUF581) Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene DNAse I-like superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The FCS-like zinc finger scaffold of the kinase SnRK1 is formed by the coordinated actions of the FLZ domain and intrinsically disordered regions. Jamsheer K M, et al. J Biol Chem, 2018 Aug 24. PMID 29945970, Free PMC Article
  2. Expression of Arabidopsis FCS-Like Zinc finger genes is differentially regulated by sugars, cellular energy level, and abiotic stress. Jamsheer K M, et al. Front Plant Sci, 2015. PMID 26442059, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_116188.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in response to starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
senescence-associated-like protein (DUF581)
NP_001190167.1
  • Protein of unknown function (DUF581); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650).
NP_191882.2
  • Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23359633..23360338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203238.1 → NP_001190167.1  senescence-associated-like protein (DUF581) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190167.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J0X4
    Conserved Domains (1) summary
    pfam04570
    Location:33 → 83
    zf-FLZ; zinc-finger of the FCS-type, C2-C2

  2. NM_116188.2 → NP_191882.2  senescence-associated-like protein (DUF581) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191882.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q4PSK3
    UniProtKB/TrEMBL
    A0A5S9XP48
    Conserved Domains (1) summary
    pfam04570
    Location:33 → 83
    zf-FLZ; zinc-finger of the FCS-type, C2-C2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4PSK3.1

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