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CKX6 cytokinin oxidase/dehydrogenase 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825519, updated on 7-Sep-2023

Summary

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Gene symbol
CKX6
Gene description
cytokinin oxidase/dehydrogenase 6
Primary source
Araport:AT3G63440
Locus tag
AT3G63440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCKX6; ATCKX7; CYTOKININ OXIDASE 6; cytokinin oxidase/dehydrogenase 6
Summary
This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
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Genomic context

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See CKX6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (23424157..23426536)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ggamma-subunit 1 Neighboring gene zinc finger CCCH domain protein Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene transducin family protein / WD-40 repeat family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity. Werner T, et al. Plant Cell, 2003 Nov. PMID 14555694, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_116209.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
  
enables cytokinin dehydrogenase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within stomatal complex morphogenesis TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cytokinin oxidase/dehydrogenase 6
NP_191903.3
  • cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23424157..23426536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116209.3 → NP_191903.3  cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191903.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WR65, Q9LY71
    UniProtKB/TrEMBL
    A0A654FKH1
    Conserved Domains (3) summary
    PLN02441
    Location:10 → 533
    PLN02441; cytokinin dehydrogenase
    pfam01565
    Location:72 → 217
    FAD_binding_4; FAD binding domain
    pfam09265
    Location:249 → 526
    Cytokin-bind; Cytokinin dehydrogenase 1, FAD and cytokinin binding
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LY71.2

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