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TTA2 fibronectin type III domain protein (DUF1423) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825525, updated on 7-Sep-2023

Summary

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Gene symbol
TTA2
Gene description
fibronectin type III domain protein (DUF1423)
Primary source
Araport:AT3G63500
Locus tag
AT3G63500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
TITANIA 2
Summary
Encodes a PHD-finger protein that, with TTA2, is redundantly required for MP-dependent embryonic root meristem initiation.
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Genomic context

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See TTA2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (23446230..23450284, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 40 Neighboring gene ATP binding microtubule motor family protein Neighboring gene Ribosomal protein L1p/L10e family Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene FMN-linked oxidoreductases superfamily protein Neighboring gene carotenoid cleavage dioxygenase 1 Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Control of embryonic meristem initiation in Arabidopsis by PHD-finger protein complexes. Saiga S, et al. Development, 2012 Apr. PMID 22378640
  2. Arabidopsis plant homeodomain finger proteins operate downstream of auxin accumulation in specifying the vasculature and primary root meristem. Thomas CL, et al. Plant J, 2009 Aug. PMID 19392692
  3. The non-JAZ TIFY protein TIFY8 from Arabidopsis thaliana is a transcriptional repressor. Cuéllar Pérez A, et al. PLoS One, 2014. PMID 24416306, Free PMC Article
  4. Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Debernardi JM, et al. Plant J, 2014 Aug. PMID 24888433
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001340219.1
NM_116215.4
NM_180412.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell fate specification IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within embryonic meristem initiation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within embryonic pattern specification IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
fibronectin type III domain protein (DUF1423)
NP_191909.1
  • Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT1G14740.1); Has 3195 Blast hits to 2635 proteins in 392 species: Archae - 10; Bacteria - 381; Metazoa - 1310; Fungi - 308; Plants - 351; Viruses - 11; Other Eukaryotes - 824 (source: NCBI BLink).
NP_850743.1
  • Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT1G14740.1); Has 795 Blast hits to 695 proteins in 144 species: Archae - 6; Bacteria - 39; Metazoa - 207; Fungi - 61; Plants - 263; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23446230..23450284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180412.2 → NP_850743.1  fibronectin type III domain protein (DUF1423) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850743.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J298
    Conserved Domains (2) summary
    pfam07227
    Location:532 → 656
    PHD_Oberon; PHD - plant homeodomain finger protein
    pfam16312
    Location:747 → 861
    Oberon_cc; Coiled-coil region of Oberon

  2. NM_116215.4 → NP_191909.1  fibronectin type III domain protein (DUF1423) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191909.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84TI3, Q9LY65
    UniProtKB/TrEMBL
    A0A178VIZ7, A0A5S9XND9, A0A654FKF3
    Conserved Domains (2) summary
    pfam07227
    Location:807 → 931
    PHD_Oberon; PHD - plant homeodomain finger protein
    pfam16312
    Location:1022 → 1136
    Oberon_cc; Coiled-coil region of Oberon

  3. NM_001340219.1 → NP_001326078.1  fibronectin type III domain protein (DUF1423) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84TI3, Q9LY65
    UniProtKB/TrEMBL
    A0A178VIZ7, A0A5S9XND9, A0A654FKF3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84TI3.2

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