U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT3G63510 FMN-linked oxidoreductases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825526, updated on 15-Feb-2024

Summary

Go to the top of the page Help
Gene symbol
AT3G63510
Gene description
FMN-linked oxidoreductases superfamily protein
Primary source
Araport:AT3G63510
Locus tag
AT3G63510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See AT3G63510 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Sequence:
Chromosome: 3; NC_003074.8 (23450536..23452794)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L1p/L10e family Neighboring gene ncRNA Neighboring gene fibronectin type III domain protein (DUF1423) Neighboring gene ncRNA Neighboring gene carotenoid cleavage dioxygenase 1 Neighboring gene RING/U-box superfamily protein Neighboring gene thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001084866.1
NM_116216.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables tRNA dihydrouridine synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tRNA dihydrouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
FMN-linked oxidoreductases superfamily protein
NP_001078335.1
  • FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11664 Blast hits to 11660 proteins in 2553 species: Archae - 58; Bacteria - 8007; Metazoa - 234; Fungi - 152; Plants - 146; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).
NP_567149.2
  • FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23450536..23452794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116216.2 → NP_567149.2  FMN-linked oxidoreductases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567149.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCW4, A0A5S9XND0, Q8H128
    Conserved Domains (2) summary
    COG0042
    Location:45 → 378
    DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
    PRK11815
    Location:43 → 379
    PRK11815; tRNA-dihydrouridine synthase A; Provisional

  2. NM_001084866.1 → NP_001078335.1  FMN-linked oxidoreductases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078335.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCW4, A0A5S9XND0, A8MRX7
    Conserved Domains (2) summary
    COG0042
    Location:21 → 345
    DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
    cl21457
    Location:31 → 346
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Tools