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AT4G19180 GDA1/CD39 nucleoside phosphatase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827656, updated on 15-Feb-2024

Summary

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Gene symbol
AT4G19180
Gene description
GDA1/CD39 nucleoside phosphatase family protein
Primary source
Araport:AT4G19180
Locus tag
AT4G19180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
APY7; apyrase 7; AtAPY7; T18B16.150; T18B16_150
Summary
Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence.
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (10485116..10488534, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene transglutaminase family protein Neighboring gene nine-cis-epoxycarotenoid dioxygenase 4 Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene zinc knuckle (CCHC-type) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Co-regulation of exine wall patterning, pollen fertility and anther dehiscence by Arabidopsis apyrases 6 and 7. Yang J, et al. Plant Physiol Biochem, 2013 Aug. PMID 23728389
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module.
    Title: Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

NM_001341328.1
NM_001341329.1
NM_118037.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables apyrase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within anther dehiscence IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within pollen exine formation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within pollen exine formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GDA1/CD39 nucleoside phosphatase family protein
NP_567579.2
  • GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT2G02970.1); Has 1352 Blast hits to 1349 proteins in 221 species: Archae - 0; Bacteria - 34; Metazoa - 590; Fungi - 302; Plants - 310; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10485116..10488534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118037.7 → NP_567579.2  GDA1/CD39 nucleoside phosphatase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567579.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JSH1, O49676
    UniProtKB/TrEMBL
    A0A178UU48, A0A5S9XUR5, A0A654FQS3
    Conserved Domains (1) summary
    cl17037
    Location:144 → 560
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

  2. NM_001341328.1 → NP_001329939.1  GDA1/CD39 nucleoside phosphatase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JSH1, O49676
    UniProtKB/TrEMBL
    A0A178UU48, A0A5S9XUR5, A0A654FQS3

  3. NM_001341329.1 → NP_001329940.1  GDA1/CD39 nucleoside phosphatase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JSH1, O49676
    UniProtKB/TrEMBL
    A0A178UU48, A0A5S9XUR5, A0A654FQS3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JSH1.1

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