U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

emb1027 Arginyl-tRNA synthetase, class Ic [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828736, updated on 7-Sep-2023

Summary

Go to the top of the page Help
Gene symbol
emb1027
Gene description
Arginyl-tRNA synthetase, class Ic
Primary source
Araport:AT4G26300
Locus tag
AT4G26300
See related
TAIR:AT4G26300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 1027; T25K17.110; T25K17_110
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See emb1027 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
19
Sequence:
Chromosome: 4; NC_003075.7 (13307977..13313109, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene elongation factor P (EF-P) family protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana. Duchêne AM, et al. Proc Natl Acad Sci U S A, 2005 Nov 8. PMID 16251277, Free PMC Article
  2. Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis. Berg M, et al. Plant J, 2005 Dec. PMID 16297076
  3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
  4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001341791.1
NM_001341792.1
NM_001341793.1
NM_001341794.1
NM_118763.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables arginine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in arginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Arginyl-tRNA synthetase, class Ic
NP_194360.1
  • embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13307977..13313109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118763.3 → NP_194360.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194360.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23247
    UniProtKB/TrEMBL
    A0A7G2F7I9
    Conserved Domains (4) summary
    cd07956
    Location:489 → 639
    Anticodon_Ia_Arg; Anticodon-binding domain of arginyl tRNA synthetases
    cd00671
    Location:182 → 449
    ArgRS_core; catalytic core domain of arginyl-tRNA synthetases
    PLN02286
    Location:65 → 642
    PLN02286; arginine-tRNA ligase
    pfam03485
    Location:76 → 154
    Arg_tRNA_synt_N; Arginyl tRNA synthetase N terminal domain

  2. NM_001341794.1 → NP_001329503.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7W8, A0A7G2F7I9
    Conserved Domains (1) summary
    PLN02286
    Location:76 → 653
    PLN02286; arginine-tRNA ligase

  3. NM_001341793.1 → NP_001329502.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V2R8, A0A384KS52, A0A7G2F7I9, Q7DLG4

  4. NM_001341792.1 → NP_001329501.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7W5, A0A7G2F7I9

  5. NM_001341791.1 → NP_001329500.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7W2, A0A654FSX8, A0A7G2F7I9
    Conserved Domains (1) summary
    PLN02286
    Location:39 → 616
    PLN02286; arginine-tRNA ligase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O23247.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools