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ABCG9 ABC-2 type transporter family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828850, updated on 15-Oct-2023

Summary

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Gene symbol
ABCG9
Gene description
ABC-2 type transporter family protein
Primary source
Araport:AT4G27420
Locus tag
AT4G27420
See related
TAIR:AT4G27420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATP-binding cassette G9; F27G19.20; F27G19_20
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Genomic context

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See ABCG9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (13712199..13714797, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene COP1-interacting protein 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Secretory COPII Protein SEC31B Is Required for Pollen Wall Development. Zhao B, et al. Plant Physiol, 2016 Nov. PMID 27634427, Free PMC Article
  2. The role of Arabidopsis ABCG9 and ABCG31 ATP binding cassette transporters in pollen fitness and the deposition of steryl glycosides on the pollen coat. Choi H, et al. Plant Cell, 2014 Jan. PMID 24474628, Free PMC Article
  3. ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis. Le Hir R, et al. Plant J, 2013 Dec. PMID 24112720
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ABCG9 and ABCG31 contribute to the accumulation of this sterol on the surface of pollen.
    Title: The role of Arabidopsis ABCG9 and ABCG31 ATP binding cassette transporters in pollen fitness and the deposition of steryl glycosides on the pollen coat.
  2. ABCG9, ABCG11 and ABCG14 are expressed in the vascular system. Mutations are responsible for defects in plant growth and affect vascular patterning. [ABCG9]
    Title: ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_118876.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cotyledon vascular tissue pattern formation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within cotyledon vascular tissue pattern formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in glycoside transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pollen wall assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within stem vascular tissue pattern formation IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in pollen coat IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
ABC-2 type transporter family protein
NP_194472.3
  • ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, sepal, flower, egg cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G25620.2); Has 389492 Blast hits to 355855 proteins in 4126 species: Archae - 7031; Bacteria - 309319; Metazoa - 8330; Fungi - 6395; Plants - 5225; Viruses - 7; Other Eukaryotes - 53185 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13712199..13714797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118876.4 → NP_194472.3  ABC-2 type transporter family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194472.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JIV3, Q9SZR9
    UniProtKB/TrEMBL
    A0A178V178, A0A5S9XYH5
    Conserved Domains (1) summary
    PLN03211
    Location:19 → 632
    PLN03211; ABC transporter G-25; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SZR9.2

Gene LinkOut

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