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HSL1 HSI2-like 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829332, updated on 6-Oct-2023

Summary

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Gene symbol
HSL1
Gene description
HSI2-like 1
Primary source
Araport:AT4G32010
Locus tag
AT4G32010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10N7.180; F10N7_180; HSI2-L1; HSI2-like 1; VAL2; VP1/ABI3-LIKE 2
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Genomic context

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Location:
chromosome: 4
Exon count:
16
Sequence:
Chromosome: 4; NC_003075.7 (15479379..15485354)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene aspartate aminotransferase 5 Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene serine/arginine repetitive matrix-like protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis. Yuan L, et al. Nucleic Acids Res, 2021 Jan 11. PMID 33270882, Free PMC Article
  2. HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings. Zhou Y, et al. Plant Cell, 2013 Jan. PMID 23362207, Free PMC Article
  3. Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings. Tsukagoshi H, et al. Proc Natl Acad Sci U S A, 2007 Feb 13. PMID 17267611, Free PMC Article
  4. VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms. Fouracre JP, et al. PLoS Genet, 2021 Jun. PMID 34181637, Free PMC Article
  5. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms.
    Title: VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms.
  2. The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis.
    Title: The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis.
  3. HDA19 and HSL1 may act together to repress seed maturation gene expression during germination. HDA19 and HSL1 may play a vital role during embryogenesis.
    Title: HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342124.1
NM_119353.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of seed germination IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of seed maturation IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
HSI2-like 1
NP_194929.2
  • HSI2-like 1 (HSL1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: high-level expression of sugar-inducible gene 2 (TAIR:AT2G30470.1); Has 1397 Blast hits to 1364 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 0; Plants - 1204; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15479379..15485354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119353.4 → NP_194929.2  HSI2-like 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194929.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49390, Q0WSC1, Q5CCK4
    UniProtKB/TrEMBL
    A0A7G2F5E7
    Conserved Domains (2) summary
    cd10017
    Location:284 → 385
    B3_DNA; Plant-specific B3-DNA binding domain
    pfam07496
    Location:521 → 563
    zf-CW; CW-type Zinc Finger

  2. NM_001342124.1 → NP_001329752.1  HSI2-like 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178US60
    Conserved Domains (2) summary
    cd10017
    Location:280 → 381
    B3_DNA; Plant-specific B3-DNA binding domain
    pfam07496
    Location:517 → 559
    zf-CW; CW-type Zinc Finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5CCK4.1

Gene LinkOut

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