Format

Send to:

Choose Destination

SQD1 sulfoquinovosyldiacylglycerol 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829440, updated on 4-Jul-2019

Summary

Gene symbol
SQD1
Gene description
sulfoquinovosyldiacylglycerol 1
Primary source
Araport:AT4G33030
Locus tag
AT4G33030
Gene type
protein coding
RNA name
sulfoquinovosyldiacylglycerol 1
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4I10.6; sulfoquinovosyldiacylglycerol 1; UDP-SULFOQUINOVOSE SYNTHASE
Summary
involved in sulfolipid biosynthesis

Genomic context

See SQD1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (15935373..15937833)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene calcineurin B-like protein 10 Neighboring gene glycine decarboxylase P-protein 1 Neighboring gene ZIP metal ion transporter family Neighboring gene Thioredoxin superfamily protein Neighboring gene calmodulin-binding family protein

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_119457.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
UDPsulfoquinovose synthase activity IDA
Inferred from Direct Assay
more info
PubMed 
UDPsulfoquinovose synthase activity IEA
Inferred from Electronic Annotation
more info
 
coenzyme binding IEA
Inferred from Electronic Annotation
more info
 
sulfotransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
zinc ion binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
cellular response to phosphate starvation IEP
Inferred from Expression Pattern
more info
PubMed 
cellular response to phosphate starvation IMP
Inferred from Mutant Phenotype
more info
PubMed 
glycolipid biosynthetic process IDA
Inferred from Direct Assay
more info
PubMed 
sulfolipid biosynthetic process IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast ISM
Inferred from Sequence Model
more info
 
plasma membrane HDA PubMed 

General protein information

Preferred Names
sulfoquinovosyldiacylglycerol 1
NP_195029.1
  • sulfoquinovosyldiacylglycerol 1 (SQD1); FUNCTIONS IN: UDPsulfoquinovose synthase activity, sulfotransferase activity, zinc ion binding; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 10748 Blast hits to 10748 proteins in 2398 species: Archae - 273; Bacteria - 7931; Metazoa - 289; Fungi - 89; Plants - 466; Viruses - 5; Other Eukaryotes - 1695 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15935373..15937833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119457.4NP_195029.1  sulfoquinovosyldiacylglycerol 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195029.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48917
    Conserved Domains (2) summary
    PLN02572
    Location:62477
    PLN02572; UDP-sulfoquinovose synthase
    COG0451
    Location:85434
    WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
Support Center