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AT5G06550 transferring glycosyl group transferase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830543, updated on 7-Sep-2023

Summary

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Gene symbol
AT5G06550
Gene description
transferring glycosyl group transferase
Primary source
Araport:AT5G06550
Locus tag
AT5G06550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15M7.8; F15M7_8; JMJ22; Jumonji domain-containing protein 22
Summary
Encodes a HR demethylase that acts as a positive regulator of seed germination in the PHYB-PIL5-SOM pathway.
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (2001071..2003112, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ABC-2 type transporter family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene myosin-binding protein (Protein of unknown function, DUF593) Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Control of seed germination by light-induced histone arginine demethylation activity. Cho JN, et al. Dev Cell, 2012 Apr 17. PMID 22483719
  2. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_120738.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cis-regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables histone demethylase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in epigenetic regulation of gene expression IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within_positive_effect gibberellin mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of seed germination IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in positive regulation of seed germination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of photomorphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to red light IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to red light IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transferring glycosyl group transferase
NP_196273.3
  • CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2001071..2003112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120738.5 → NP_196273.3  transferring glycosyl group transferase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196273.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67XX3, Q9FG15
    UniProtKB/TrEMBL
    A0A178U9P6
    Conserved Domains (2) summary
    pfam12937
    Location:88 → 129
    F-box-like; F-box-like
    cl21464
    Location:203 → 422
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q67XX3.1

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