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AT5G08400 structural maintenance of chromosomes-like protein, putative (DUF3531) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830738, updated on 7-Sep-2023

Summary

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Gene symbol
AT5G08400
Gene description
structural maintenance of chromosomes-like protein, putative (DUF3531)
Primary source
Araport:AT5G08400
Locus tag
AT5G08400
See related
TAIR:AT5G08400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8L15.130; F8L15_130
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Genomic context

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See AT5G08400 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (2706458..2708946, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene alpha-galactosidase 1 Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Radical SAM superfamily protein Neighboring gene ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001036779.2
NM_120924.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
structural maintenance of chromosomes-like protein, putative (DUF3531)
NP_001031856.1
  • Protein of unknown function (DUF3531); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3531 (InterPro:IPR021920); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3531) (TAIR:AT4G29400.1); Has 314 Blast hits to 314 proteins in 83 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
NP_196457.2
  • Protein of unknown function (DUF3531); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3531 (InterPro:IPR021920); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3531) (TAIR:AT4G29400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2706458..2708946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036779.2 → NP_001031856.1  structural maintenance of chromosomes-like protein, putative (DUF3531) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031856.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9H6, A0A5S9Y4P7, A0A654FZZ0, A0A7G2F633, B9DGL0, F4KB18
    Conserved Domains (1) summary
    pfam12049
    Location:151 → 288
    DUF3531; Protein of unknown function (DUF3531)

  2. NM_120924.3 → NP_196457.2  structural maintenance of chromosomes-like protein, putative (DUF3531) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196457.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y4P7, A0A654FZZ0, A0A7G2F633, B9DGL0, Q8VZD1
    Conserved Domains (1) summary
    pfam12049
    Location:184 → 321
    DUF3531; Protein of unknown function (DUF3531)
Nucleotide Protein
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