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DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831009, updated on 15-Feb-2024

Summary

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Gene symbol
DXPS3
Gene description
1-deoxy-D-xylulose 5-phosphate synthase 3
Primary source
Araport:AT5G11380
Locus tag
AT5G11380
See related
TAIR:AT5G11380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
1-deoxy-D-xylulose 5-phosphate (DXP) synthase 3; 1-deoxy-D-xylulose 5-phosphate synthase 3; DXS3; F2I11.270; F2I11_270
Summary
Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.
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Genomic context

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See DXPS3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (3629988..3633511)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNAse I-like superfamily protein Neighboring gene Interleukin-1 receptor-associated kinase 4 protein Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene WPP domain-interacting protein 1 Neighboring gene Protein kinase superfamily protein Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. Lange BM, et al. Plant Mol Biol, 2003 Apr. PMID 12777052
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001085101.2
NM_001343183.1
NM_001343184.1
NM_121176.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 1-deoxy-D-xylulose-5-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables 1-deoxy-D-xylulose-5-phosphate synthase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in 1-deoxy-D-xylulose 5-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in terpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
1-deoxy-D-xylulose 5-phosphate synthase 3
NP_001078570.1
  • 1-deoxy-D-xylulose 5-phosphate synthase 3 (DXPS3); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: terpenoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Deoxyxylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 11671 Blast hits to 11637 proteins in 2411 species: Archae - 101; Bacteria - 6667; Metazoa - 252; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 4446 (source: NCBI BLink).
NP_196699.1
  • 1-deoxy-D-xylulose 5-phosphate synthase 3 (DXPS3); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: metabolic process, terpenoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Deoxyxylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3629988..3633511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085101.2 → NP_001078570.1  1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078570.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0WUB4
    Conserved Domains (2) summary
    cd07033
    Location:386 → 539
    TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
    pfam13292
    Location:78 → 362
    DXP_synthase_N; 1-deoxy-D-xylulose-5-phosphate synthase

  2. NM_001343183.1 → NP_001332634.1  1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1R7T385

  3. NM_121176.4 → NP_196699.1  1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196699.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G078, A0A7G2FCV2, Q9LFL9
    Conserved Domains (1) summary
    PLN02225
    Location:1 → 700
    PLN02225; 1-deoxy-D-xylulose-5-phosphate synthase

  4. NM_001343184.1 → NP_001332633.1  1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BHL8
Nucleotide Protein
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