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AT5G11500 coiled-coil protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831022, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G11500
Gene description
coiled-coil protein
Primary source
Araport:AT5G11500
Locus tag
AT5G11500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15N18.90; F15N18_90
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (3676548..3679738)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene adaptin family protein Neighboring gene myb domain protein 3r-4 Neighboring gene aspartate aminotransferase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
  2. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
  3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203362.1
NM_121188.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
coiled-coil protein
NP_001190291.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532).
NP_196711.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3676548..3679738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203362.1 → NP_001190291.1  coiled-coil protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190291.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JXW2, Q8LA72, Q94K26
    Conserved Domains (2) summary
    pfam05670
    Location:12 → 99
    DUF814; Domain of unknown function (DUF814)
    cl03922
    Location:122 → 185
    V-ATPase_G; Vacuolar (H+)-ATPase G subunit

  2. NM_121188.3 → NP_196711.1  coiled-coil protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196711.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQS1, Q8LA72, Q94K26, Q9LYE1
    Conserved Domains (2) summary
    PTZ00266
    Location:114 → 182
    PTZ00266; NIMA-related protein kinase; Provisional
    pfam05670
    Location:1 → 112
    DUF814; Domain of unknown function (DUF814)
Nucleotide Protein
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