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AT5G17850 Sodium/calcium exchanger family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831653, updated on 15-Oct-2023

Summary

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Gene symbol
AT5G17850
Gene description
Sodium/calcium exchanger family protein
Primary source
Araport:AT5G17850
Locus tag
AT5G17850
See related
TAIR:AT5G17850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MVA3.200; MVA3_200
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Genomic context

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See AT5G17850 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (5898852..5901157)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DnaJ/Hsp40 cysteine-rich domain superfamily protein Neighboring gene uncharacterized protein Neighboring gene calcium exchanger 7 Neighboring gene plastid-specific 50S ribosomal protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Endoplasmic reticulum-localized CCX2 is required for osmotolerance by regulating ER and cytosolic Ca(2+) dynamics in Arabidopsis. Corso M, et al. Proc Natl Acad Sci U S A, 2018 Apr 10. PMID 29581277, Free PMC Article
  2. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001343526.1
NM_121791.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium:sodium antiporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within calcium ion transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Sodium/calcium exchanger family protein
NP_001318589.1
  • Sodium/calcium exchanger family protein; FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: calcium exchanger 7 (TAIR:AT5G17860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5898852..5901157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343526.1 → NP_001318589.1  Sodium/calcium exchanger family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FKP2
    UniProtKB/TrEMBL
    A0A178UBA6, A0A5S9Y5Q9, A0A654G272
    Conserved Domains (1) summary
    PLN03151
    Location:34 → 556
    PLN03151; cation/calcium exchanger; Provisional

  2. NM_121791.2 → NP_197287.1  Sodium/calcium exchanger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197287.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FKP2
    UniProtKB/TrEMBL
    A0A178UBA6, A0A5S9Y5Q9, A0A654G272
    Conserved Domains (1) summary
    PLN03151
    Location:34 → 556
    PLN03151; cation/calcium exchanger; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FKP2.1

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