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AT5G18420 CCR4-NOT transcription complex subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831960, updated on 15-Oct-2023

Summary

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Gene symbol
AT5G18420
Gene description
CCR4-NOT transcription complex subunit
Primary source
Araport:AT5G18420
Locus tag
AT5G18420
See related
TAIR:AT5G18420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20L16.140; F20L16_140
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Genomic context

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See AT5G18420 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (6105283..6109501, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene transcription activator Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene GATA zinc finger protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001343546.1
NM_121847.5
NM_180514.4
NM_203073.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit
NP_197343.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
NP_850845.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 233 Blast hits to 233 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
NP_974802.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6105283..6109501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121847.5 → NP_197343.1  CCR4-NOT transcription complex subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197343.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGT7, B4F7Q4
    Conserved Domains (1) summary
    pfam10155
    Location:312 → 437
    DUF2363; Uncharacterized conserved protein (DUF2363)

  2. NM_180514.4 → NP_850845.1  CCR4-NOT transcription complex subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850845.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGV6, B4F7N8
    Conserved Domains (1) summary
    pfam10155
    Location:312 → 438
    DUF2363; Uncharacterized conserved protein (DUF2363)

  3. NM_001343546.1 → NP_001332174.1  CCR4-NOT transcription complex subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BG97

  4. NM_203073.1 → NP_974802.1  CCR4-NOT transcription complex subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974802.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGV6, F4JWN4
    Conserved Domains (1) summary
    pfam10155
    Location:309 → 435
    DUF2363; Uncharacterized conserved protein (DUF2363)
Nucleotide Protein
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