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ROPGEF10 ROP uanine nucleotide exchange factor 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832076, updated on 15-Feb-2024

Summary

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Gene symbol
ROPGEF10
Gene description
ROP uanine nucleotide exchange factor 10
Primary source
Araport:AT5G19560
Locus tag
AT5G19560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10; ATROPGEF10; GEF10; guanine exchange factor 10; ROP (rho of plants) guanine nucleotide exchange factor 10; ROP uanine nucleotide exchange factor 10; T20D1.80; T20D1_80
Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
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Genomic context

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See ROPGEF10 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (6602910..6606506)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene thermosome subunit gamma Neighboring gene aspartate aminotransferase 2 Neighboring gene uncharacterized protein Neighboring gene glyoxal oxidase-related protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis RopGEF4 and RopGEF10 are important for FERONIA-mediated developmental but not environmental regulation of root hair growth. Huang GQ, et al. New Phytol, 2013 Dec. PMID 23915272
  2. FERONIA receptor kinase pathway suppresses abscisic acid signaling in Arabidopsis by activating ABI2 phosphatase. Yu F, et al. Proc Natl Acad Sci U S A, 2012 Sep 4. PMID 22908257, Free PMC Article
  3. Members of a novel class of Arabidopsis Rho guanine nucleotide exchange factors control Rho GTPase-dependent polar growth. Gu Y, et al. Plant Cell, 2006 Feb. PMID 16415208, Free PMC Article
  4. A new family of RhoGEFs activates the Rop molecular switch in plants. Berken A, et al. Nature, 2005 Aug 25. PMID 15980860
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RopGEF4 and RopGEF10 are genetic components in FER-mediated, developmentally (but not environmentally) regulated, root hair growth.
    Title: Arabidopsis RopGEF4 and RopGEF10 are important for FERONIA-mediated developmental but not environmental regulation of root hair growth.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001343611.1
NM_121961.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
is_active_in apical plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ROP uanine nucleotide exchange factor 10
NP_001318601.1
  • ROP uanine nucleotide exchange factor 10 (ROPGEF10); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 8 (TAIR:AT3G24620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6602910..6606506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343613.1 → NP_001331395.1  ROP uanine nucleotide exchange factor 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BDP4

  2. NM_001343612.1 → NP_001331396.1  ROP uanine nucleotide exchange factor 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BDS2

  3. NM_001343614.1 → NP_001331397.1  ROP uanine nucleotide exchange factor 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BDV2, A0A7G2F9V8
    Conserved Domains (1) summary
    pfam03759
    Location:62 → 415
    PRONE; PRONE (Plant-specific Rop nucleotide exchanger)

  4. NM_001343611.1 → NP_001318601.1  ROP uanine nucleotide exchange factor 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MFH1, Q1KS66
    UniProtKB/TrEMBL
    A0A178U9P8, A0A5S9Y5L8, A0A7G2F9V8
    Conserved Domains (1) summary
    pfam03759
    Location:43 → 396
    PRONE; PRONE (Plant-specific Rop nucleotide exchanger)

  5. NM_121961.2 → NP_197457.1  ROP uanine nucleotide exchange factor 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197457.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MFH1, Q1KS66
    UniProtKB/TrEMBL
    A0A178U9P8, A0A5S9Y5L8, A0A7G2F9V8
    Conserved Domains (1) summary
    pfam03759
    Location:43 → 396
    PRONE; PRONE (Plant-specific Rop nucleotide exchanger)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1KS66.1

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