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AT5G19570 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832077, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G19570
Gene description
uncharacterized protein
Primary source
Araport:AT5G19570
Locus tag
AT5G19570
See related
TAIR:AT5G19570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20D1.90; T20D1_90
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Genomic context

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See AT5G19570 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (6606564..6607321)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene aspartate aminotransferase 2 Neighboring gene ROP uanine nucleotide exchange factor 10 Neighboring gene glyoxal oxidase-related protein Neighboring gene DUF538 family protein (Protein of unknown function, DUF538) Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_121962.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_197458.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0546 (InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6606564..6607321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121962.2 → NP_197458.1  uncharacterized protein AT5G19570 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197458.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIX0, A0A7G2FBS2, Q94AU5
    Conserved Domains (1) summary
    pfam10639
    Location:8 → 136
    TMEM234; Putative transmembrane family 234
Nucleotide Protein
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