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AT5G19580 glyoxal oxidase-related protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832078, updated on 7-Sep-2023

Summary

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Gene symbol
AT5G19580
Gene description
glyoxal oxidase-related protein
Primary source
Araport:AT5G19580
Locus tag
AT5G19580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20D1.100; T20D1_100
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Genomic context

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See AT5G19580 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (6607371..6609799, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ROP uanine nucleotide exchange factor 10 Neighboring gene uncharacterized protein Neighboring gene DUF538 family protein (Protein of unknown function, DUF538) Neighboring gene uncharacterized protein Neighboring gene sulfate transporter 3;5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_121963.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glyoxal oxidase-related protein
NP_197459.1
  • glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin-like fold (InterPro:IPR013783), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G67290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6607371..6609799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121963.4 → NP_197459.1  glyoxal oxidase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197459.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMI2, F4K172, Q8RY19
    Conserved Domains (2) summary
    cd02851
    Location:485 → 593
    E_set_GO_C; C-terminal Early set domain associated with the catalytic domain of galactose oxidase
    pfam07250
    Location:91 → 334
    Glyoxal_oxid_N; Glyoxal oxidase N-terminus
Nucleotide Protein
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