U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT5G19590 DUF538 family protein (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832079, updated on 7-Sep-2023

Summary

Go to the top of the page Help
Gene symbol
AT5G19590
Gene description
DUF538 family protein (Protein of unknown function, DUF538)
Primary source
Araport:AT5G19590
Locus tag
AT5G19590
See related
TAIR:AT5G19590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T29J13.10; T29J13_10
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See AT5G19590 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (6610428..6612162, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene glyoxal oxidase-related protein Neighboring gene uncharacterized protein Neighboring gene sulfate transporter 3;5 Neighboring gene GNOM-like 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Protein disulfide isomerase-2 of Arabidopsis mediates protein folding and localizes to both the secretory pathway and nucleus, where it interacts with maternal effect embryo arrest factor. Cho EJ, et al. Mol Cells, 2011 Nov. PMID 21909944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001343615.1
NM_121964.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
DUF538 family protein (Protein of unknown function, DUF538)
NP_197460.1
  • Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6610428..6612162 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121964.4 → NP_197460.1  DUF538 family protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197460.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UF42, A0A384LAG8, Q8GUJ9
    Conserved Domains (1) summary
    pfam04398
    Location:35 → 138
    DUF538; Protein of unknown function, DUF538

  2. NM_001343615.1 → NP_001332740.1  DUF538 family protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UF42, A0A384LAG8, Q8GUJ9
    Conserved Domains (1) summary
    pfam04398
    Location:35 → 138
    DUF538; Protein of unknown function, DUF538
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools